Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3281 ATGCGTCGCCGGCGAAGCTCTGTCCGGCCGTCGGTTTTGCCGGCCAATGCTGAACCTAGCCGCTTCCTCAAGATCATACTTCCGGGAGACATTCATGCCGAGAACATGGGGATTCCAAAGGAGTTCGTGAGAAGATTTGAGAATGAACTGTGCACTGGTGAGGCAACGATTGGTGTTCCAGATGGTCGTGTTTGGAAGATGGAACTGAAGAAAACTGAAAACGAAGTTTTGTTCTGCAAGAGTTGGGAGGAATTTGTGCAGTACTACTCTCTTAAATTTGGCTACTCTTTAGTGTTTACATATGCAGGCAATTCACAGTTTAATGTGGTGATCTTTGATCCGAGTGCTGCTGAGATTTACTATCCACTCAAAGTTAACCCTGAGATGCAGAACTCGGCACCTAAACGGCGTAGTGAAAGGCCATCCGGATTTGATCAATGTGGCGACAACACAAGGAGCCAAAGGCAGAAGCTGGTGGAAGACGAACAAGAAATAATTGACATAGAGGATGATAATGCACTGAGCCATGGTAAATCTGGAAACAAAGATAGAACTGGGCGAGAAATTGGTAATTCAAGAAAGAATGAGAAAGGGAAAGGTAGATCTGGGCAAGGCCGTTGTTCCAAAATGATGAATAGAGCTTTGAGTAAAAGAAGGCAAAGAGCTAAGCAAGCTACCCAGAATTCCGAATCAAAAAATCCTCTATCTTTTACTGCAATAATAAGGCCACACAATCTAAATGGTTATTATATTGATGTGCCGGGTTCATTCTGGAAGGTTTATCTGCACAAAAATTATCCTATGAAGCTGCAGGATTGTAATGGACGAAAATGGAAGGTCAATTATGTTAAACGCGAGTCAAGTCTCCGAATCGGGAAGGGTTGGATCAGTTTTGCAAGGGCCAACAATTTGAAGGAAGAAGACGTCTGTGATTTTGAGCTTATCAAGAGGAACTACTACTTTGATCGATTTCGCAAGAAAGAAGGGGACTTTTCCAGTAACCACTTCAATTCTTCATCCACATTCATTTCTCACAGAAACAACAAACGCATAATATGGCTGATCAACTTGCGGATTCGCTCCCAACCGTCACATCAGGAGACGACATTATCGGTGATTCTCTTCAAACCAATCAATATACAGTCAAGTTCGATCTTCGAACCTCCATCATCATCGGCGTTGTATCAGGCTCTGGTTCTCAGCAACATGCAGGCCTGGATAATGGTGGGAGCAATAATGGAGGATTCGGCCGAGAACGTTGACGAGAGAAGAGGGGAAACTCTGAGGTCGATGAAGAAACTGCCGGCGTTGGTGAAGTTTGGAAGCGGGCATGATGGGAATAATAATAGAGAAATTGTGAGGATTGTGTGA 1371 0.4398 MRRRRSSVRPSVLPANAEPSRFLKIILPGDIHAENMGIPKEFVRRFENELCTGEATIGVPDGRVWKMELKKTENEVLFCKSWEEFVQYYSLKFGYSLVFTYAGNSQFNVVIFDPSAAEIYYPLKVNPEMQNSAPKRRSERPSGFDQCGDNTRSQRQKLVEDEQEIIDIEDDNALSHGKSGNKDRTGREIGNSRKNEKGKGRSGQGRCSKMMNRALSKRRQRAKQATQNSESKNPLSFTAIIRPHNLNGYYIDVPGSFWKVYLHKNYPMKLQDCNGRKWKVNYVKRESSLRIGKGWISFARANNLKEEDVCDFELIKRNYYFDRFRKKEGDFSSNHFNSSSTFISHRNNKRIIWLINLRIRSQPSHQETTLSVILFKPINIQSSSIFEPPSSSALYQALVLSNMQAWIMVGAIMEDSAENVDERRGETLRSMKKLPALVKFGSGHDGNNNREIVRIV 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3281 456 Gene3D - 14 116 IPR015300 -
Acco01g3281 456 CDD B3_DNA 236 321 IPR003340 GO:0003677
Acco01g3281 456 Pfam B3 DNA binding domain 22 113 IPR003340 GO:0003677
Acco01g3281 456 Pfam B3 DNA binding domain 238 317 IPR003340 GO:0003677
Acco01g3281 456 MobiDBLite consensus disorder prediction 130 156 - -
Acco01g3281 456 ProSiteProfiles B3 DNA-binding domain profile. 236 328 IPR003340 GO:0003677
Acco01g3281 456 Gene3D - 215 327 IPR015300 -
Acco01g3281 456 PANTHER B3 DOMAIN-CONTAINING 18 318 - -
Acco01g3281 456 MobiDBLite consensus disorder prediction 169 208 - -
Acco01g3281 456 ProSiteProfiles B3 DNA-binding domain profile. 21 115 IPR003340 GO:0003677
Acco01g3281 456 MobiDBLite consensus disorder prediction 169 203 - -
Acco01g3281 456 SUPERFAMILY DNA-binding pseudobarrel domain 233 317 IPR015300 -
Acco01g3281 456 SUPERFAMILY DNA-binding pseudobarrel domain 18 115 IPR015300 -
Acco01g3281 456 CDD B3_DNA 21 113 IPR003340 GO:0003677
Acco01g3281 456 SMART B3_2 237 327 IPR003340 GO:0003677
Acco01g3281 456 SMART B3_2 22 115 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3281 Acco-ChrAcco01 50025663 50028665 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3281 22 316 B3 DNA Binding Superfamily AT3G18990 27.628 5.32e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco01g3281 B3 5.4e-14 CL0405