Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3279 ATGAGTTCCCGATGGATGGGTCGCCGGCGAAGCTCTGTCGGGCCGTCGGTTTTTCCGGCCAATGCTGAACCTAGCCGCTTCCTCAAGATCATACTTCCGGGAGACATTCATGCCCAGAACATGGGGATTCCAAAGGAGTTCGTGAGAAGATTTGAGAATGAACTGTGCACTGGTGAGGCAACGATTGGTGTTCCAGATGGTCGTGTTTGGAAGATGGAACTGAAGAAAACTGAAAACGAAGTTTTGTTCTGCAAGAGTTGGGAGGAATTTGTGAAGTACTACTCTCTTAGATTTGGCTTCTTTCTTGTGTTTACATATGAAGGCAATTCACAGTTCAATGTGGTGATTTTTGATCCGAGTGCTGCTGAGATTTACTATCCACTCAAAGTTAACCCTGAGAAGCAGAACTCGGCACCTAAGCAGCGTAGTGAAAGGCCATCCGGCTTTGATCAATGTGGCTACGACAAAAGGAGCCAAAGGCAGAAGCTGCTGGAAGAGGAACAAGAAATTATTGACATAGAGGATGATAATGCACTGAGCCATGGTAAATCTGGAAACAAAGATAGAACTGGGCGAGAAATTGGTAATTCAAGAAAGAATGAGAAAGGGAAAGGTAGATCTGGGCAAGGCCGTTGCTCCAAAATGATGAATAGAGCTTTGAGTAAAAGAAGGCAAAGAGCTAAGCAAGTTACCCAGAATTCCGAATCAAAAAATCTTCTATCTTTTACTGCAATAATAAGGCCAACCAATCTAAATCGTTGTTATATTGATGTGCCGGCTTCATTCTGGAAGGTTTATCTGTACAAAAATTATCCTATGAAGCTGCAGGATTGTAATGGACGAAAATGGAAGGTCAATTATGTTAAACGCGAGTCAAGGCTCCGAATCGGGATGGGTTGGATCAGTTTTGCAAGGGCCAACAATTTGAAGGAAGAAGACGTCTGTGATTTTGAGCTTATCAGGAGGAACAACTACTTTAAACATCAAACGCATAAAATGGCTGATCAAAGTGCAGATTCGCTCCCAACCGTCACATCAGGAGACGACATTATTGGTGATTCTCTTCAAACCAATCAATACACAGTCACATTCGATCTTCGAACCTCCATCATCATCAACATGCAGGCATCGAAGAGGGGAAACTCTGGGTGCGATGAAGAAACTGCCGGCGTTGGTGAAGTTTGGAAGCAGGCATGA 1197 0.4386 MSSRWMGRRRSSVGPSVFPANAEPSRFLKIILPGDIHAQNMGIPKEFVRRFENELCTGEATIGVPDGRVWKMELKKTENEVLFCKSWEEFVKYYSLRFGFFLVFTYEGNSQFNVVIFDPSAAEIYYPLKVNPEKQNSAPKQRSERPSGFDQCGYDKRSQRQKLLEEEQEIIDIEDDNALSHGKSGNKDRTGREIGNSRKNEKGKGRSGQGRCSKMMNRALSKRRQRAKQVTQNSESKNLLSFTAIIRPTNLNRCYIDVPASFWKVYLYKNYPMKLQDCNGRKWKVNYVKRESRLRIGMGWISFARANNLKEEDVCDFELIRRNNYFKHQTHKMADQSADSLPTVTSGDDIIGDSLQTNQYTVTFDLRTSIIINMQASKRGNSGCDEETAGVGEVWKQA 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3279 398 CDD B3_DNA 26 118 IPR003340 GO:0003677
Acco01g3279 398 SMART B3_2 242 334 IPR003340 GO:0003677
Acco01g3279 398 SMART B3_2 27 120 IPR003340 GO:0003677
Acco01g3279 398 SUPERFAMILY DNA-binding pseudobarrel domain 23 120 IPR015300 -
Acco01g3279 398 Gene3D - 220 332 IPR015300 -
Acco01g3279 398 SUPERFAMILY DNA-binding pseudobarrel domain 238 326 IPR015300 -
Acco01g3279 398 Coils Coil 156 176 - -
Acco01g3279 398 MobiDBLite consensus disorder prediction 175 212 - -
Acco01g3279 398 ProSiteProfiles B3 DNA-binding domain profile. 241 334 IPR003340 GO:0003677
Acco01g3279 398 PANTHER B3 DOMAIN-CONTAINING 23 323 - -
Acco01g3279 398 MobiDBLite consensus disorder prediction 175 208 - -
Acco01g3279 398 MobiDBLite consensus disorder prediction 133 155 - -
Acco01g3279 398 ProSiteProfiles B3 DNA-binding domain profile. 26 120 IPR003340 GO:0003677
Acco01g3279 398 Pfam B3 DNA binding domain 243 326 IPR003340 GO:0003677
Acco01g3279 398 Pfam B3 DNA binding domain 27 118 IPR003340 GO:0003677
Acco01g3279 398 Gene3D - 19 121 IPR015300 -
Acco01g3279 398 CDD B3_DNA 241 327 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3279 Acco-ChrAcco01 50014602 50017574 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3279 27 325 B3 DNA Binding Superfamily AT3G18990 28.528 1.44e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco01g3279 B3 1.2e-12 CL0405