Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3261 ATGGAGAGGAAGCGACCATTCACTGAGAAGTCAAAGGATAAAGTTATTGAAGAAGCAGAAGAGGAAGAAGATGAAAGGAAGGGTGGCGGCGGCGGTGGTCATGTTGCAGAAGAGGAAAAGAAGAAAGGGGTTGGTGGGAGTAACAGAAGAGGACCAAGTGGTGGTTATAAAGTTTCTTCAGCTTCCTGTCAAGCAGAGAGGTGTGGAGCTAACTTGGCTGATGCAAAGAGATACCATCGCCGCCATAAAGTGTGTGAGTTTCATTCCAAAGCGCCTGTTGTGATCGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACATAGGGGAATTTGATGAGGCGAAGAGGAGCTGCCGGAGGAGATTGGCGGAGCACAACGAGAGGCGGCGGAAAAGCAATGCTGAAACTCACAACGATGGTGGCGAAGATCATCATCATCAGAACTCAATGGAAGGGCGTTTCAGGCATGTTGATGACAGGGGAAGAAGAGTGAATCAGATGGACGTTAATTGTGGAAATTGGAGCAGCAAGTCTTTCCATATCAGATGA 564 0.4858 MERKRPFTEKSKDKVIEEAEEEEDERKGGGGGGHVAEEEKKKGVGGSNRRGPSGGYKVSSASCQAERCGANLADAKRYHRRHKVCEFHSKAPVVIVAGLRQRFCQQCSRFHDIGEFDEAKRSCRRRLAEHNERRRKSNAETHNDGGEDHHHQNSMEGRFRHVDDRGRRVNQMDVNCGNWSSKSFHIR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3261 187 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Acco01g3261 187 Gene3D - 58 124 IPR036893 GO:0003677|GO:0005634
Acco01g3261 187 MobiDBLite consensus disorder prediction 25 46 - -
Acco01g3261 187 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 140 IPR044817 GO:0003677
Acco01g3261 187 MobiDBLite consensus disorder prediction 1 17 - -
Acco01g3261 187 FunFam Squamosa promoter-binding-like protein 14 54 124 - -
Acco01g3261 187 MobiDBLite consensus disorder prediction 127 157 - -
Acco01g3261 187 Pfam SBP domain 63 136 IPR004333 GO:0003677
Acco01g3261 187 Coils Coil 120 140 - -
Acco01g3261 187 MobiDBLite consensus disorder prediction 1 60 - -
Acco01g3261 187 SUPERFAMILY SBT domain 62 141 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3261 Acco-ChrAcco01 49881204 49881981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3261 50 146 SBP-box Gene Family AT3G15270 62.887 1.53e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Acco01g3261 SBP 1.2e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3261 01 49881204 49881981 Acco06g2131 06 16123317 16124721 ECH
Acco01g3261 01 49881204 49881981 Acco01g3261 01 49881204 49881981 ECH