Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3256 ATGGGAAAAGAGGAAAGTGGCGGGAGAGGAGTGGCGAGTGGGGCGCATAGTACTAATACAAATCCACCCAAGTGGAGTATGACATTGTCTCCTTTTCCTTCACACCTTCAATCCTCATTCCCTCCACTCAGATTCCCTTTTACTCCCTTCCCGATGGCTCCCCGAGATCCACCCATCTCAGTCGCCGCACCCAACGGCTCCGCCCTTTCCGCTAAGGAGATTCGCTATCGCGGCGTCAGGAAGAGACCCTGGGGACGTTATGCCGCCGAGATCCGTGACCCCGGCAAGAAAACTCGCGTTTGGCTTGGTACTTTCGACACCGCTGAGGAGGCTGCGCGTGCCTACGACATCGCCGCACGGGATTTCCGTGGACCCAAGGCCAAGACCAATTTCCCCACTCCTTCTGAGCTTGTAAATAACACCAACAACTCTACCCGCAGTCCTAGCCAGAGCAACACCCTCGATTCTTCCTCTCCGCCTCCACCGCCGCCGCCGCTAGACCTTAGTCTCACTCCGCTTTCTGCCGGCGTCGGTGTTATGGGGTTTCCGGTCATCCCCGTGGCCCGTCCTGTTGTGTTTTTCGATGCGTTTGCGAGGGCTGATAACATGAGAAGCGTTGCCCGCCGCGAGATGTGCAAGTTTGACCGCCCGGTGACCGATTTACGTCCCGTCCCCGGCAGTGGGCAGAGCGACTCCGACTCGTCCTTCGTCGCGAACTACGAGCGTGCTCCACAGCCTCGGAGGCTTCTGGATCTTGACCTTAACCTTGCTCCTCCGGCGGAGGTTGCCTGA 792 0.5846 MGKEESGGRGVASGAHSTNTNPPKWSMTLSPFPSHLQSSFPPLRFPFTPFPMAPRDPPISVAAPNGSALSAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDIAARDFRGPKAKTNFPTPSELVNNTNNSTRSPSQSNTLDSSSPPPPPPPLDLSLTPLSAGVGVMGFPVIPVARPVVFFDAFARADNMRSVARREMCKFDRPVTDLRPVPGSGQSDSDSSFVANYERAPQPRRLLDLDLNLAPPAEVA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3256 263 SMART rav1_2 75 138 IPR001471 GO:0003700|GO:0006355
Acco01g3256 263 MobiDBLite consensus disorder prediction 219 241 - -
Acco01g3256 263 MobiDBLite consensus disorder prediction 12 30 - -
Acco01g3256 263 Pfam AP2 domain 75 124 IPR001471 GO:0003700|GO:0006355
Acco01g3256 263 SUPERFAMILY DNA-binding domain 75 133 IPR016177 GO:0003677
Acco01g3256 263 MobiDBLite consensus disorder prediction 225 239 - -
Acco01g3256 263 MobiDBLite consensus disorder prediction 124 169 - -
Acco01g3256 263 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Acco01g3256 263 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Acco01g3256 263 CDD AP2 75 132 IPR001471 GO:0003700|GO:0006355
Acco01g3256 263 Gene3D AP2/ERF domain 74 133 IPR036955 GO:0003700|GO:0006355
Acco01g3256 263 ProSiteProfiles AP2/ERF domain profile. 75 132 IPR001471 GO:0003700|GO:0006355
Acco01g3256 263 MobiDBLite consensus disorder prediction 155 169 - -
Acco01g3256 263 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 48 207 - -
Acco01g3256 263 MobiDBLite consensus disorder prediction 132 154 - -
Acco01g3256 263 MobiDBLite consensus disorder prediction 1 30 - -
Acco01g3256 263 FunFam Ethylene-responsive transcription factor 2 75 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3256 Acco-ChrAcco01 49830792 49831721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3256 62 195 AP2-EREBP Transcription Factor Family AT3G15210 62.329 5.93e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco01g3256 AP2 1.5e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3256 01 49830792 49831721 Acco06g2116 06 15979585 15980280 ECH
Acco01g3256 01 49830792 49831721 Acco01g3256 01 49830792 49831721 ECH