Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3252 ATGGATAGCTACTTCCATGGTGATAATGGTGATGCCCATCTGCCTCCTGGGTTTCGCTTCCACCCAACTGACGAGGAACTCATTACTTTCTACCTCCTCAAGAAGGTTCTAGACAACACCTTCACCGGAAGAGCCATTGCTGAAGTTGATCTTAACAAGTGTGAGCCTTGGGAGCTTCCTGAGAAAGCGAAGATGGGTGAGAAAGAGTGGTACTTCTTTAGCCTCCGAGACCGAAAGTACCCAACTGGACTGCGAACTAACAGGGCAACAGAGGCTGGATACTGGAAGGCCACTGGAAAAGACAGGGAGATTTACAGCTCGAAAACTTGCAGTCTCGTGGGCATGAAGAAGACTCTGGTTTTCTACAGAGGAAGAGCGCCAAAGGGCGAGAAGAGCAATTGGGTCATGCATGAGTATCGTCTTGAAGGCAAATTTGCTTATCATTACCTTTCACGCAGCTCCAGGGATGAATGGGTCATCTCGCGTGTTTTCCAGAAGAGTCTCTCCTCCACGGGTAACGGCAGCTCCACCTTGTCTTCTGCCAGTGGCTCCAAGAAGACCAACCCAAGAATGAGCTCTTCTGTTATCATGAGCCTCTACCCAGAGCCCAGTTCTCCTTCCATCTACCTTCCCCCTCTGCTTGATTCATCTCCTTACGCCGCCGCCGCTAACGACCGTGACAGCTGCTCCTACGACGGCAGCAGCACAACTCCGAGGGAGCACGTGTCCTGTTTCTCCACATTTTCTGCTTCTGCTGCCGCCAACAACCTCCCTAATGTTAGCTATGAACTTGCTCCTCCGCCGCCGCCGACAGTGGTTCTAGACCCATTTGCTCGATTCCAGAACAACGTTGGTGTTTCTGCGTTCCCTAGCCTGAGATCACTGCAGGAGAATCTTCAACTGTCTTTCCTATCTCCGGCGGCCGTAGCTCATGATGGCTCTAATGGTGGAGACATGAACGGATGGGAGAAGCGGGAGGAGCAGACTGTGGCGGGTGCTGGTACCGGCATGGTGCTGTTCCCGTCGGAGCTTGATTACATGTGGGGCGGCTACTAG 1056 0.5256 MDSYFHGDNGDAHLPPGFRFHPTDEELITFYLLKKVLDNTFTGRAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSRDEWVISRVFQKSLSSTGNGSSTLSSASGSKKTNPRMSSSVIMSLYPEPSSPSIYLPPLLDSSPYAAAANDRDSCSYDGSSTTPREHVSCFSTFSASAAANNLPNVSYELAPPPPPTVVLDPFARFQNNVGVSAFPSLRSLQENLQLSFLSPAAVAHDGSNGGDMNGWEKREEQTVAGAGTGMVLFPSELDYMWGGY 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3252 351 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Acco01g3252 351 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 226 - -
Acco01g3252 351 FunFam NAC domain-containing protein 100-like 23 170 - -
Acco01g3252 351 Gene3D NAC domain 23 169 IPR036093 GO:0003677|GO:0006355
Acco01g3252 351 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
Acco01g3252 351 MobiDBLite consensus disorder prediction 168 190 - -
Acco01g3252 351 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3252 Acco-ChrAcco01 49803396 49805150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3252 4 300 NAC Transcription Factor Family AT5G53950 60.191 1.34e-119 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco01g3252 NAM 1.4e-40 No_clan