Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3250 ATGGAGAATTTCTTCCTCTCGTTCCAAAACCAGAAACACAATAAAAGGAGGCTGACTGAAGATCAACTGGGCATCCTAGAGAAAAGCTTTGCCTGCAGTAAGAAGCTGGAGCCAGAGCAGAAGTTACAGCTCTCAAAACAACTTGGTGTGCCTCCGAGGCAAATTGCGATATGGTACCAGAACAAGCGAGCTCGCTGGAAGACACAGAGTCTTGAGGAGGACTATGGTGCCTTGAAGTTGAAGCTAGAGAATGTGCTGGCTGAGAAGAAGCAGCTTGAGAGAGATGTCGAAAGGCTCAAGGCTGAGCTAAAGGAGGCCAAGAAGATGTTGCTCTCCATGAAACGTGAAGGAGGAGAAGGTCATAGTCATACTTCTTTGGCTGAATTTTCATATGATTGTGCAGAGGTTATGCAGGTTGAAGAGCTTTACACTAGTTTCATCGGTTCAAATAAGTTCGTCTGA 462 0.4567 MENFFLSFQNQKHNKRRLTEDQLGILEKSFACSKKLEPEQKLQLSKQLGVPPRQIAIWYQNKRARWKTQSLEEDYGALKLKLENVLAEKKQLERDVERLKAELKEAKKMLLSMKREGGEGHSHTSLAEFSYDCAEVMQVEELYTSFIGSNKFV 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3250 153 Coils Coil 68 116 - -
Acco01g3250 153 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 121 IPR045224 GO:0003700
Acco01g3250 153 SMART HOX_1 11 73 IPR001356 GO:0003677
Acco01g3250 153 ProSiteProfiles 'Homeobox' domain profile. 9 69 IPR001356 GO:0003677
Acco01g3250 153 CDD homeodomain 12 70 IPR001356 GO:0003677
Acco01g3250 153 Pfam Homeodomain 13 67 IPR001356 GO:0003677
Acco01g3250 153 SUPERFAMILY Homeodomain-like 11 77 IPR009057 -
Acco01g3250 153 Gene3D - 8 76 - -
Acco01g3250 153 ProSitePatterns 'Homeobox' domain signature. 44 67 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3250 Acco-ChrAcco01 49781190 49781651 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3250 12 149 Homeobox Transcription Factor Family AT5G53980 45.324 7.25e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Acco01g3250 Homeodomain 6.3e-17 CL0123