Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3238 ATGGTGGCAGCTTCAGGAAACACCAGTAACATTGATTCTCACTATTCACCAGATGCTTATGACAATGGTTTGATGTATGGAATGACACAGTTTAATGGGGCTCATCATCAACCCAATCTTGATGTGGGTGTTGCTGCATCACCTAGCTTGTTTTTTCCTGCAATTAATCCTGCCTCTGGTGCTGGTGTAGTGCCTCAGCCGATTAATTACCAAGCACCTGATCAATTGCCTGCTCCAGGCGCATATGCTGTCTCTGGAATTTTCATGGATGATGCAAGATGTCCATACAAACAAAAAGTTGCTGAGGGCATCAGAGGAAATTACCAACATTTTAATGCTGCAGCTAGTTCTTCGGTAGCTCCTCCAAATGCTAGGCACTCTGTTGGGGTTTCTGCATCTTTTTCTTTGCCTCAGTTTAGAGGAAATCACATTCCACCACTTGTAGAAGTTGGACCTCACGGTAGTTTGTGGAGCAGATCTGGTGACTCAGTTATGGTGCATGAACACAACCATTTAATTCGAGGAAACTATTTGGGCCAGCATTTTCAACCTGCTCCACCTCCCTGGTTGGACCAGCAGTTGAACGGTGCCAACACTGAAGGAAATAATATGGCCTGGAATCAGTCTCATTCAATGCCTAATGTGCAAGCTGCAGTAAATGGAAATTCATTGGAGAATGCAAATACAGGTATGCAGAGATATCATGATGCAGCTAGCAACAGAAGCAGCCTCAGGTTTGCTCATCCTCCTCCTGTAAACCACCAGCACCATAATTATCACCTTCCAACTCTGCCTATGCAAGGAGTAAGAGGCCACAATATCACCTTCCCCCCTCCAGTTACTGCAACTGCTTATAGAGGAGTTCCATCAAATTCTTCCCACGGCACCATTATACCGGTGCAGAATGGTTTTGGGTTGGGTTCTAGGCATGTTGGCCCTGCACCATCAGCAAGCCAACGGGTTCATCATTCTCATAGAGGAGGCGTGCCTGATACATCTTATAGACATCACAATTCCCGTCCAATGAGGTTTTTGCATGTTGATGATGTTGCTTTACTCGATGAAGTGGAAAATTTAGGTGACCATCATCATGGTGATATGCATTTGGACATCGAGGATATGTCTTATGAGGAGCTTCTTGCTTTGGGCGAGCGTATCGGCAATGTGAACACAGGTTTGTCAGAGGAAACTATCACAACTCAATTGAAAACAAAAATTTTCAAGTCCTCCGCTCCCACTAATCTGGAGGAGGCAGCGTCTAAGGATGATGAGGAACCTGATTCTTGCATCATATGCCTGGAGGAATATAAGAACCAAGAGACGATTGGAATTCTCAAATGTGGGCATGATTATCATGCTGATTGCTTGAAGAAATGGTTGCTGCTGAAGAATGTCTGCCCTATTTGCAAATCAGAGGCATTGACCTCTAGAAGGAATGACGTATGA 1446 0.4467 MVAASGNTSNIDSHYSPDAYDNGLMYGMTQFNGAHHQPNLDVGVAASPSLFFPAINPASGAGVVPQPINYQAPDQLPAPGAYAVSGIFMDDARCPYKQKVAEGIRGNYQHFNAAASSSVAPPNARHSVGVSASFSLPQFRGNHIPPLVEVGPHGSLWSRSGDSVMVHEHNHLIRGNYLGQHFQPAPPPWLDQQLNGANTEGNNMAWNQSHSMPNVQAAVNGNSLENANTGMQRYHDAASNRSSLRFAHPPPVNHQHHNYHLPTLPMQGVRGHNITFPPPVTATAYRGVPSNSSHGTIIPVQNGFGLGSRHVGPAPSASQRVHHSHRGGVPDTSYRHHNSRPMRFLHVDDVALLDEVENLGDHHHGDMHLDIEDMSYEELLALGERIGNVNTGLSEETITTQLKTKIFKSSAPTNLEEAASKDDEEPDSCIICLEEYKNQETIGILKCGHDYHADCLKKWLLLKNVCPICKSEALTSRRNDV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3238 481 SMART ring_2 429 469 IPR001841 -
Acco01g3238 481 MobiDBLite consensus disorder prediction 312 336 - -
Acco01g3238 481 CDD RING-H2_RNF24-like 427 473 - -
Acco01g3238 481 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 389 474 IPR013083 -
Acco01g3238 481 SUPERFAMILY RING/U-box 422 475 - -
Acco01g3238 481 ProSiteProfiles Zinc finger RING-type profile. 429 470 IPR001841 -
Acco01g3238 481 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 95 474 IPR045191 GO:0061630
Acco01g3238 481 Pfam Ring finger domain 427 470 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3238 Acco-ChrAcco01 49710746 49713143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3238 337 476 C3H Transcription Factor Family AT2G15530 47.222 3.01e-36 140
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3238 01 49710746 49713143 Acco01g3238 01 49710746 49713143 ECH