Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3224 ATGATTAGCGCTGGATTATGCAGTCTCCGAATGTTTTGCTTGCATCTCCCTTGCTTCTCAAAGAAATCTCTACTCCGACCTGCTCGGTTCTCTTTCACTTGCCGCCGCCGTCTTTTGGCCACCGCATCATCGGTTTCCGGCGCTAATAAGAAGAAAACTAAAGAGAAGGTCATCGTCATTTCTGGCCCCACTGGGTCTGGTAAAAGCCGGCTTGCTTTAGAGCTCGCGAAGCGCCTCAATGGTGAAATTATCAGTGCGGATTCTGTCCAGGTGTACCAGGGTCTTGATGTTGGATCAGCAAAGCCCTCCAAAAATGATAGAAAGGAGGTACCACATCATCTGGTTGACATATTGCACCCATCTGAAGATTATTCTGTTGGGCAATTTTTTGAGGATGCAAGGCAAGCTACAAGGTGTATTCTTGACAATGGTCATGTTCCTATTGTTGTTGGGGGAACTGGATTGTATTTAAGATGGTTCATTTATGGAAAGCCTGATGTTCCCAAGGCCTCTCCAGAGACTACATCTGAAGTGTATTTGGAGTTAGCTGAATTACAGAGGAATGGGCAATGGGATGCAGCTGTGCAGTTGGTAATAGAAGCAGGTGACCCAAAGGCCCAATTTATAACTCCCAATGATTGGTATCGATTGCAACGTAGCCTTGAGATTATTAAGTCTAGTGGATCACCTCCATCTGCTTTTCGGGTACCATATGATTCTTTCAGGGAGCAGGGAGATTCTAGTGTTACGGACAACACTTACTATTCTGATGTCAACGCTATTTCTGGTGGAACGAAAGAAACATCCTCAGATTTGGACTATGAGTTCATTTGTTTTTTCCTTTCCACACGAAGGCTTGACCTGTATAGATTAATTGATTATCGCTGTGAGGATATGCTATTAGAGAGGGATGGGATATTGTCCGAGGCTCAATGGCTTCTTAATATTGGTCTTCATCCTAATTCAAATTCTGCAACAAAAGCAATTGGTTACAGGCAGGCCATGGACTTCTTAGTAAGATGCAGACTGCAAGGAGGTCAGAGTTCAGTTCGAGAGTTCTTCAATTTTTTACATGAATTTCAAAAGGCATCTAGGAACTTTGCCAAAAGGCAATTGACTTGGTTTCGAAATGAACATATATACCACTGGCTTGATGCTTCTAAACCTCTGGACGCCATTCTAGACTTTATTCATAGATCTTACCATGATAACAGTGGAACCCTCATTGTTCCTCAACACTTGGCAATGTCTAGAGATGCTTCTAATGGTCGAGAAGCTAATGAACTAAAGGCTTACCGCAGCAAAAATAGGCTTTTCTTGAATAAAGAGGATTGCGTTCATGTTCTAGACTGGATAAGGAGAACTCAACAAGGTTGGGCCGAGCCGGCCCAATGAAATTATCGTGGACCGGAGCCGAAAACGTTGCTACAATGCTGCCGCCAGCTCATGAGCCCTAATAAAGGTCACTTCCTCGATAACCCCTTCAGTCTAAACTCGCACTCCTGCACTCTCTCTTTCTCTCCAGCTTTCCGATTGTATCCTGAGAAAGTTCGAGAGAAAATGAAGCCCTCGATGCTCAGATCCCTCCACTCTGCCATCTCTCGGAATTCCTCCCACCTTGCACGTCGTAGCTACTCCTCCGAATCATGTCCAGAGCGCAAGGTAGCCGTCCTTGGAGCCGCCGGCGGTATTGGTCAGCCCCTTTCTTTGCTGATGAAGCTCAACCCTCTTGTTTCAAGTCTGTCTCTGTATGATATTGCCGGTACCCCCGGTGTCGCTGCTGATGTCAGCCACATCAACACCAGATCTGAGGTGGCCGGATACCAAGGTGAAGAAGAGCTGGGGAAAGCTTTGGAGGGATCGGATGTTGTTATAATCCCCGCTGGTGTGCCCAGGAAACCCGGAATGACGCGTGATGATCTGTTCAACATTAATGCGGGCATTGTCAAGTCACTCTGCACTGCTATTGCTAAATACTGCCCCAACGCCCTTGTTAACATGATTAGCAATCCTGTTAACTCAACCGTTCCTATTGCTGCCGAAGTTTTCAAAAAGGCTGGGACATATAATGAAAAGAAGTTGTTTGGTGTTACTACCCTTGACGTTGTTAGGGCAAAAACTTTCTATGCTGGGAAGGCCAAAGTTCCAGTTGCTGATGTCAATGTGCCTGTTGTAGGTGGTCATGCAGGCATTACTATTCTTCCATTATTTTCTCAAGCAACACCTAAAGCCAATCTGGGTGATGATGAAATTAAGGCTCTTACGAAGAGAACACAAGATGGAGGAACAGAAGTTGTAGAAGCCAAGGCTGGAAAGGGTTCTGCAACTTTGTCAATGGCCTATGCTGGAGCCCTTTTTGCTGATGCTTGCCTCAAGGGTCTCAACGGAGTCCCAGATGTTGTTGAATGCTCATTTGTGCAATCCAGTATCACTGAACTTCCTTTCTTTGCTTCCAAGGTGAGACTTGGTAAGAATGGTGCAGAGGAAGTGCTGGGTTTGGGTCCTCTCTCAGACTATGAAAAGCAAGGGCTTGAAAGTCTATTGCCCGAACTCAAGGCATCTATTGAGAAGGGAATCAAATTCGCCAACCAGTAA 2595 0.4555 MISAGLCSLRMFCLHLPCFSKKSLLRPARFSFTCRRRLLATASSVSGANKKKTKEKVIVISGPTGSGKSRLALELAKRLNGEIISADSVQVYQGLDVGSAKPSKNDRKEVPHHLVDILHPSEDYSVGQFFEDARQATRCILDNGHVPIVVGGTGLYLRWFIYGKPDVPKASPETTSEVYLELAELQRNGQWDAAVQLVIEAGDPKAQFITPNDWYRLQRSLEIIKSSGSPPSAFRVPYDSFREQGDSSVTDNTYYSDVNAISGGTKETSSDLDYEFICFFLSTRRLDLYRLIDYRCEDMLLERDGILSEAQWLLNIGLHPNSNSATKAIGYRQAMDFLVRCRLQGGQSSVREFFNFLHEFQKASRNFAKRQLTWFRNEHIYHWLDASKPLDAILDFIHRSYHDNSGTLIVPQHLAMSRDASNGREANELKAYRSKNRLFLNKEDCVHVLDWIRRTQQGWAEPAQXNYRGPEPKTLLQCCRQLMSPNKGHFLDNPFSLNSHSCTLSFSPAFRLYPEKVREKMKPSMLRSLHSAISRNSSHLARRSYSSESCPERKVAVLGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTPGVAADVSHINTRSEVAGYQGEEELGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKAKVPVADVNVPVVGGHAGITILPLFSQATPKANLGDDEIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSSITELPFFASKVRLGKNGAEEVLGLGPLSDYEKQGLESLLPELKASIEKGIKFANQ 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3224 864 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 554 696 IPR036291 -
Acco01g3224 864 PANTHER MALATE AND LACTATE DEHYDROGENASE 536 864 - -
Acco01g3224 864 Gene3D - 165 236 - -
Acco01g3224 864 FunFam Malate dehydrogenase 698 864 - -
Acco01g3224 864 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 698 861 IPR022383 GO:0016616
Acco01g3224 864 ProSitePatterns Malate dehydrogenase active site signature. 697 709 IPR001252 GO:0006108|GO:0016615
Acco01g3224 864 FunFam Malate dehydrogenase 551 697 - -
Acco01g3224 864 SUPERFAMILY LDH C-terminal domain-like 697 863 IPR015955 GO:0003824|GO:0016616
Acco01g3224 864 Pfam IPP transferase 90 378 - -
Acco01g3224 864 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 57 234 IPR018022 GO:0008033
Acco01g3224 864 Pfam lactate/malate dehydrogenase, NAD binding domain 554 696 IPR001236 GO:0016491
Acco01g3224 864 Gene3D - 552 697 - -
Acco01g3224 864 FunFam tRNA dimethylallyltransferase 9 165 236 - -
Acco01g3224 864 NCBIfam malate dehydrogenase 554 863 IPR010097 GO:0006099|GO:0030060
Acco01g3224 864 Gene3D - 698 863 IPR015955 GO:0003824|GO:0016616
Acco01g3224 864 Hamap tRNA dimethylallyltransferase [miaA]. 57 395 IPR018022 GO:0008033
Acco01g3224 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 180 IPR027417 -
Acco01g3224 864 CDD MDH_glyoxysomal_mitochondrial 554 862 IPR010097 GO:0006099|GO:0030060
Acco01g3224 864 Gene3D - 54 446 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3224 Acco-ChrAcco01 49633741 49642002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3224 60 338 C2H2 Transcription Factor Family AT2G27760 28.223 5.25e-20 92.4