Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3220 ATGGCCTTAAATTCCTTTGCATTTCATTTCATACTCCAAAGGATTTTCTCGACTAAGTTTAATCCAAAGGAAGACCATCAAGTCCGAGTCAACATCCCAAACCAGCAATTCCTCTTCTCTCCATCTCTCTATCTCTCTTCTGCTACTGGGTTTACTGAAAGTAAGTTCACCTTTAATATATTGGAGGATTATAGATTAATTTTCGATTACTTACGTTGCAGCACTGGGTTGGATCCACTGAAGCCCCTGAGTTCCTCTGTGATGAGTTGGTTCTCTTGCTTTATCAGAAAAAAGGGATGTGTCTCAGCCACACAACCAACCAAAATTGATCTTGAGGTTTCAGACATTCGGAATGTGACCCTTTACACCTACAAGGAACTTGAAACTGCCACAGCAGGTTTTAGCCCAGCAAACAAGATAGGGCAAGGCGGTTTCGGATCTGTCTATAAGGGAAAGCTGAGAAATGGGACTCTTGCTGCCATAAAGTTGTTGTCAGCTGACTCGCTTCAAGGGGTTCGGGAATTCCTGACAGAAATCAAGGTGATCACTAGCATAGAGCACGAGAACCTAGTTAAGTTGTACGGATGCTGTGTGGAAGAAAATCACAGGATTCTGGTGTATGGCTATCTTGAAAATAATAGCCTAGCTCAGACACTTATTGGTGGCGGCCATAGTAGCATTCAGTTCAGTTGGCCCGTGCGGAGGAACATTTGCATAGGTGTTGCTCGGGGCCTAGCATTCCTTCATGAGGGGGTTGAACCACATATTATTCATAGAGACATTAAAGCAAGCAATATACTACTTGATAAAAACCTGCAGCCTAAAATTTCTGATTTTGGACTTGCAAAACTTCTTTCTCCAAACCTAACCCATATTAGTACACGTGTTGCTGGAACAGCTGGTTATCTAGCGCCTGAGTATGCAATACGAAGTCAAGTAACAAGAAGATCAGATGTCTACAGTTTCGGAGTTCTATTATTGGAAATCGTTAGTGGGAGGTGTAATACAAACCGAAGGTTACCTGCTGAAGAACATTATCTTGTTCCAAAGGCATGGACTATGTATGAAAATGGGGACCTGGAGAAACTGGTGGATGCATTGCTAGAAGACGACTTCAATGTTGAGGAGGCATGCAGGTTTTGCAAGATCGGTCTTCTCTGCACTCAGGATTCTCCTCAGCTTCGACCATCAATGTCTTCTGTGCTTGGCATGTTGAAGGGTGAAATTGACGTAGATGAAAAGAAAATTACAAAGCCAGGATTACTGTTTGAGTTTGTAGAAATGAAAGATGCAAAGAAGCAAAAAGATGAGGCTGAAGTACAAAATACATCTTCCCTTGGCATCTCAGAGAAGAAAGATGATTCCTCTTATACAGGAACCACAACCTCTTTTGCTACCATGACCTTCACTTCAATTTATGACCGAAGCTCTTAA 1434 0.4219 MALNSFAFHFILQRIFSTKFNPKEDHQVRVNIPNQQFLFSPSLYLSSATGFTESKFTFNILEDYRLIFDYLRCSTGLDPLKPLSSSVMSWFSCFIRKKGCVSATQPTKIDLEVSDIRNVTLYTYKELETATAGFSPANKIGQGGFGSVYKGKLRNGTLAAIKLLSADSLQGVREFLTEIKVITSIEHENLVKLYGCCVEENHRILVYGYLENNSLAQTLIGGGHSSIQFSWPVRRNICIGVARGLAFLHEGVEPHIIHRDIKASNILLDKNLQPKISDFGLAKLLSPNLTHISTRVAGTAGYLAPEYAIRSQVTRRSDVYSFGVLLLEIVSGRCNTNRRLPAEEHYLVPKAWTMYENGDLEKLVDALLEDDFNVEEACRFCKIGLLCTQDSPQLRPSMSSVLGMLKGEIDVDEKKITKPGLLFEFVEMKDAKKQKDEAEVQNTSSLGISEKKDDSSYTGTTTSFATMTFTSIYDRSS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3220 477 Pfam Protein kinase domain 137 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g3220 477 Gene3D Transferase(Phosphotransferase) domain 1 210 418 - -
Acco01g3220 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Acco01g3220 477 ProSitePatterns Protein kinases ATP-binding region signature. 140 162 IPR017441 GO:0005524
Acco01g3220 477 SMART serkin_6 134 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g3220 477 ProSiteProfiles Protein kinase domain profile. 134 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g3220 477 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 96 439 - -
Acco01g3220 477 SUPERFAMILY Protein kinase-like (PK-like) 113 405 IPR011009 -
Acco01g3220 477 Gene3D Phosphorylase Kinase; domain 1 105 209 - -
Acco01g3220 477 CDD STKc_IRAK 140 407 - -
Acco01g3220 477 MobiDBLite consensus disorder prediction 434 461 - -
Acco01g3220 477 FunFam Putative LRR receptor-like serine/threonine-protein kinase 210 417 - -
Acco01g3220 477 MobiDBLite consensus disorder prediction 440 461 - -
Acco01g3220 477 FunFam cold-responsive protein kinase 1 105 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3220 Acco-ChrAcco01 49615461 49620389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3220 122 411 Receptor kinase-like Gene Family AT1G53430 55.862 1.10e-101 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco01g3220 Pkinase 3.5e-45 CL0016