Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3218 ATGTTTCAAAACAAAGAAATAGAGGATTTATATGATGACAACTTTGAAGGTTCTAATGATGAAAGACGGATTTTTACTGAGGTATTTTTCGGTACAGACAGTGTTCAGCCTAGTCAGAGGTGTTTTGTTACTGGAGCCATCAACTTTGAATGTGAATCTAGTAAAAACACAAATATTTCGCTCTGCTCTAGCAATGAAAACTCAGTTGTAACAAGCCCCTCTTCTTCAAAAGTGACGCATTCTGAGGAAGATTGTGATGTGATTCTGAATTTGAAAGAGGCTGCTCTTGATTGTATGCCTGAGAGATTCAATTACGAAGGCCCAAATCTCGAGGATGTAAATGTCAAGCGCATGAAATTTTCCCTGCATGAACCTCCCTGTAGTAGATCCAATTTCAAAAAGGTTTTGAGTTCACCAACACTTTCAAAAGGACGTGTTACTGACATGTCCGGTGCTGTTATAGACTTTGATAGTAAACCACTTTCACTTCGTTTAGTTGAATCATCAAAGCATGGTTTGATATCCAGTTGCTATCTGTTGAGGCATAGCATGATGCCAAACAAACGAAGATGTAAGGATGATGTAGGTGTTTCAAATTGTACAAAAACCACTGCAGATGGAAATTTGGTCAAAGAAGTGGCTACAAGTATAGTGGCTGCTTCTCCTGTTTCCCAAGAGAGCTTTGCAAATAAGCTTGTAGTAACAAGTCCATCAATCACTGCTGTGGAGAAATCTGGACCTCATTTCCAATCTGAGGAGACGGCTAAAGGATTTTTATCCTATGATGCGGATAAGTCAAATTTATCATTGACACCAGGCCTCAAGAAGGATCCCCGTGATTTATTGCATTACCGTAGTGTGAGGTTGCTTTTGATGGCAGGATGGTCTATTGAAAAGATCAAGAGACCTTGTAGAAACTACTTTGAGTCACTCTATAGGACACCAGAAGGAAGGCCGGTTCGTGAGTTTATAAAAGCTTGGCGATTATGTGGTCAGTTTTTGTCTGTTGACAAGTACAATTCAATGCAGGATAATTGTAAAGAATGGGCTGATATTGGTCAATTCTTGTCTGATCTATCCAATGCACTGATAAATGTTGAAAAGGAAATGAATCAGGCAGAGCCAGCTGCTATGTTAGCTTATCAATGGTGGCTTCTGGATCCTTTTGTAGTACTAATTTTTTTTAAAAGAAAGATTGGTGCACTGAAAAAGGGGGAACTAGTGAAGGTGGCTCGAAGTATAGTTCCAAGAAATTATAAGATGGCATGTAATGCCAAACGTTCAGCCTGGGAGGATACTCCTGCATCTCCATTTGATCTGAAACATGACTCAGCTTTTCTTTTTGACTCTGCTACTGCCACTGGGAGCAAACCAACAACGTCTATGCTCAACTACCATGCCTGTAATCAGAAAACTGGGGATGGAAATAACTTAGGGTATGAACAGACAATTAGTGGGGTGACAAAACTTCCAATATATGAATGTAATAGTATTGGTAACCAGGAAGAGATGTACTTAGAACACAATGCTGACTGCGTAGGAAATCAATGCAGGAAAGCGTCTTTGTATGAAAGGAGCATTCTTGGTGTAGGCTTGTTACCTGATGATGGGTTGGGTTTTACCAGTACACAGTCAAGTGCTTGTACTTCCAATGTTACTACTTCTGGAAATTCAAATCAGGTATTTAGAGGGCTTAAGGTAAACACTTGTCAGGAAAGTAATGTTAGACATTTTGAAAGCTCTGATGAAAAGTACTTGGAAAATTTGTTGGAAACAAGTAAGAGAGTTGGTGGGGATGTGCCAATGGACAAGGTCGAGGAAAAGGATCCATCAGATGGCGAAGTTCAAGATCTTTATGGAAGTTATCTGCAGGAATCCTTGAATAGATATCCACATGGAGCAAGACGTGGCTTGGTTCATTGTCATGCCTCTGAGGCTGTTCAGCAGTCTGAATATGGTGAGGAATGGGGTGGAAAAAGATCAAGAGCTTCTGTGCTTGGTACAGAAAACACATGTTCTACCCCTGATGCTAATCTGATAAAGAAGATACGGAGGAAGTGTAAAAGGGTATCTGAAATCAAACTGAGTATGTTATATGAAAGTAACGCAATGGGTTCTACAGTTACAGATGAGGTCCAATTAACAAATGGTGAGGTGTGTGGTACTCGCTTAGAATTTGAAGAGGGTGAGCGTGTAGTTGACAATGCAGAGGATAGAGGAGCCCACAGTAAATTATCTTCAACCAGTTCATTCCAGCAACCACATATTGGAAGAAGAAATGCAAAGTTTAGAAAGAGTTGTAACAACTATGACCCTATAACTGAAAAACCAAAGTCTAGTGGATGCCAGATTGCAGATGATGACCTGTTGGTTTCAGCTATTTTTAAGAAAACATGTTTCATTAGAGGGGAATCTAAATCTAAATCCTGCAAATCAAGAGCTCAGAGAAAGCTGAAAAGGAAAAAGGATCATTGCAGGTTGCTACCAAGAAACCTTGGCAATGGAGGGGAGCGCATTAGAGATGGCAAGAGGTGTTATCTTGGGGCAAGAACAGTGCTGTCATGGTTGGTTGAGAATGGGATCATTTCTATAAATGATGTGATTCAATACCGAAACCTTAAAGATAATGCTGTCATTAAGGATGGCAGGATTACCAGTGATGGCATTATATGTAAGTGTTGCAATAAGTTGCTTACATTATCTGAGTTCAAGTTTCATGCTGGCTATAGATTGAATCGCCCCTGCTTGAACCTTTTCATGGAGTCTGGTGAGCCCTTTACATTGTGCCTGCTTCAAGCTTGGTCTGCTGAATACAAGGCTAGGAAAAGTGGGAATCGAACTGTGAAAGCTGACAACAATGGTGATAAAAATGATGACTCATGTGGATTGTGTGGTGATGGCGGTGAGTTGATATGCTGTGATAACTGTCCATCAGCTTTCCATCTTGCTTGTTTGTCCACTCAGGATATCCCCGAAGGCAACTGGTACTGCACAAACTGCACTTGTCAGATTTGTGAGAATTTTGTCAATGATAAAGAGGCTTCTAGTGCTCATGATACATTGCGATGTTTACAGTGTGAGCATAAATATCATGAAAAGTGTCTGAGTGGAGGTGGTAAACCAGAAGGGGAAGTTTCTGACGGTTGGTTCTGTGGTGGACGCTGTCAAGAGGTATACTTTGGTTTTCAATCTCGGGTTGGACTTGTTAATCACATTGATGGTGGCCTCTCATGGATGCTTCTTAAATGCATCCAAGATGACCAAAAGGTTCATTCTGCTCAGTGGTTTGCCCTCAAGGCACTATGCAATACAAAGTTAGCTGTTGCCCTTACCATCATGGAGGAGTGCTTTTTGTCAATGATGGATCCTACAACAGGCATAGACATGATACCCCATGCTTTATATAATTGGGGGTCCGATTTTGCCCGCCTGAATTTTCAAGGATTTTACACCGTGGTATTGAAGAAAAAAGATGTCATAATTTCCGTTGCATCTATCAGGGTGCATGGAACTACAGTTGCAGAGATGCCACTTATTGCTACTTGTAGCAGTTACCGCCGGCAGGGAATGTGCCGACTCCTTGTGAGTGCAATTGAAGAGATGTTAATATCTGTCAAGGTAGCAAAGCTTGTGATAGCAGCCATTCCTGATTTAGTGGAGACTTGGACCAAGGGCTTTGGATTCAAACCTGTAAGTGATGATGAAAAGCAGAAACTGAACAAGATAAACCTGATGGTTTTTCCTGGGACTGTATTACTTGAAAAACCTTTGTTCAAGGAAGATAAAACAGAAGATGACTTGACCAAAGTAGGTGTCTGCTGTAAAGGAATGGCGATGGCTGAACCATTGCAGCAAGATGTCGGAGACAACTCCGTTGATGAAATTGGTGCTAAGACCAATACTGAACATGGATGCAGCGAGAATGACACAGATTACAGAACTGAATCACTGCGGCAAGATGTAGAAAACAATAATACTGATGAACTTAGCACTAAGTCTGAAACAGAACATGTTTGCAGCAAGAATTTCCCAGATTACAGAGCTGAGTCATCATTAGGATTGAAAGAAACAGCGGATAGGAATACCCATTTAAGTGGAGAGAAGATCAATGGCTTTGTAGACAGTACGCAGGAATTGAGAATTAGCAGCAAAATGGAATCTACAAATGAGTCTGTGCAGCACTCTAGTGGGAACTGTTGCACCTACAAAGACTGTAGTGAATCAGTAGTAAGAATTTTTGAGAACAGGGATATCAAAGTGGGTGAAGGTCAGCAAAATGACTTGCGGGGCCCTTTTTTGCAAATGTCCTGCAAAGCAATATTAGGCAACAATTTTGACGTGGATTCCATAATTGAATCCTCGGGAATGTATGATGAAACACAGCTTTCTTTGGAACAGAACTCAGCAGGAGGCATGTGA 4419 0.4096 MFQNKEIEDLYDDNFEGSNDERRIFTEVFFGTDSVQPSQRCFVTGAINFECESSKNTNISLCSSNENSVVTSPSSSKVTHSEEDCDVILNLKEAALDCMPERFNYEGPNLEDVNVKRMKFSLHEPPCSRSNFKKVLSSPTLSKGRVTDMSGAVIDFDSKPLSLRLVESSKHGLISSCYLLRHSMMPNKRRCKDDVGVSNCTKTTADGNLVKEVATSIVAASPVSQESFANKLVVTSPSITAVEKSGPHFQSEETAKGFLSYDADKSNLSLTPGLKKDPRDLLHYRSVRLLLMAGWSIEKIKRPCRNYFESLYRTPEGRPVREFIKAWRLCGQFLSVDKYNSMQDNCKEWADIGQFLSDLSNALINVEKEMNQAEPAAMLAYQWWLLDPFVVLIFFKRKIGALKKGELVKVARSIVPRNYKMACNAKRSAWEDTPASPFDLKHDSAFLFDSATATGSKPTTSMLNYHACNQKTGDGNNLGYEQTISGVTKLPIYECNSIGNQEEMYLEHNADCVGNQCRKASLYERSILGVGLLPDDGLGFTSTQSSACTSNVTTSGNSNQVFRGLKVNTCQESNVRHFESSDEKYLENLLETSKRVGGDVPMDKVEEKDPSDGEVQDLYGSYLQESLNRYPHGARRGLVHCHASEAVQQSEYGEEWGGKRSRASVLGTENTCSTPDANLIKKIRRKCKRVSEIKLSMLYESNAMGSTVTDEVQLTNGEVCGTRLEFEEGERVVDNAEDRGAHSKLSSTSSFQQPHIGRRNAKFRKSCNNYDPITEKPKSSGCQIADDDLLVSAIFKKTCFIRGESKSKSCKSRAQRKLKRKKDHCRLLPRNLGNGGERIRDGKRCYLGARTVLSWLVENGIISINDVIQYRNLKDNAVIKDGRITSDGIICKCCNKLLTLSEFKFHAGYRLNRPCLNLFMESGEPFTLCLLQAWSAEYKARKSGNRTVKADNNGDKNDDSCGLCGDGGELICCDNCPSAFHLACLSTQDIPEGNWYCTNCTCQICENFVNDKEASSAHDTLRCLQCEHKYHEKCLSGGGKPEGEVSDGWFCGGRCQEVYFGFQSRVGLVNHIDGGLSWMLLKCIQDDQKVHSAQWFALKALCNTKLAVALTIMEECFLSMMDPTTGIDMIPHALYNWGSDFARLNFQGFYTVVLKKKDVIISVASIRVHGTTVAEMPLIATCSSYRRQGMCRLLVSAIEEMLISVKVAKLVIAAIPDLVETWTKGFGFKPVSDDEKQKLNKINLMVFPGTVLLEKPLFKEDKTEDDLTKVGVCCKGMAMAEPLQQDVGDNSVDEIGAKTNTEHGCSENDTDYRTESLRQDVENNNTDELSTKSETEHVCSKNFPDYRAESSLGLKETADRNTHLSGEKINGFVDSTQELRISSKMESTNESVQHSSGNCCTYKDCSESVVRIFENRDIKVGEGQQNDLRGPFLQMSCKAILGNNFDVDSIIESSGMYDETQLSLEQNSAGGM 1472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3218 1472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 945 1018 IPR013083 -
Acco01g3218 1472 CDD PHD1_AIRE 961 1000 - -
Acco01g3218 1472 ProSiteProfiles Zinc finger PHD-type profile. 958 1003 IPR019787 -
Acco01g3218 1472 PANTHER PHD FINGER FAMILY PROTEIN 2 1406 - -
Acco01g3218 1472 Pfam Tify domain binding domain 882 932 IPR032308 -
Acco01g3218 1472 SUPERFAMILY FYVE/PHD zinc finger 951 1001 IPR011011 -
Acco01g3218 1472 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1109 1233 IPR016181 -
Acco01g3218 1472 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1108 1258 IPR000182 GO:0016747
Acco01g3218 1472 SMART PHD_3 960 1001 IPR001965 -
Acco01g3218 1472 SMART PHD_3 1002 1056 IPR001965 -
Acco01g3218 1472 Pfam PHD-finger 961 1002 IPR019787 -
Acco01g3218 1472 Gene3D - 1132 1245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3218 Acco-ChrAcco01 49586736 49594625 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3218 1 420 PHD Transcription Factor Family AT3G14980 34.198 2.55e-45 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco01g3218 TDBD 3.7e-15 No_clan