Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3215 ATGTCGCATTCTGAGAAGCCCGATTCGGAGCTAGGGTTACATGCTCTCCGCGAACGATTTCGCGAATCAGTGAGCTGCGAGGCGAACAAGCCGGATTTTCGCGAGCTTGATCTTGGGTCGCCGGTTTCGCCATTGCGCACACGTAAGAGTGGACCTGCTGCGAGTGGACTTACCACTACTACCAGCAGCAGTTCCAGTTCATCTGGATCGGTTTCTGGGCGCCATGGGCGCAACCCGGTCTCGAAAAGATCCGATTCTGGTGCGAACAACCACTCCGGTGAGCTTTCAGTTTCCAGCGAGAGCAGTCCTACTGCCGCCGAGAGCCTTCGATCTGGGGGGAATGCCAGGAACTTCAAACCGGGTTACGCAAGATCCGATGCCGGGACCACCCCACCTCTAATCTATTCGGGTCAAAGCTCTTCCGTCACATCACCGGCGTTGAATGTTCTTCCTACTGGCAATATCTGTCCGACTGGCAAGTTTCTGAAGACGGGCATGGCGTCTAATCGGACCACCAGGACGGACGTTTTGGGCTCCGGTATGGCCAATTATGGCCACGGAAGCATAATGCGGGGCGGTGGAACATCCAAACATACTGCCGGAGAGGCGGCAAGTACGGCAAATGCTAGGGCAGTCGGTAGTGGCGGGTTCAAGAAATCGGCGCCCGGGTTGGATCCAGAAGAGGTAAAGAGAGCGGCGAACGAGCAGTATAGGAGGGGTAACTTTACGGAGGCATTGAATCTTTACGATCTGGCAATTGAAGTGTCCCCAGGTAATGCCGCCTACCGGAGCAACCGTGCAGCTGCATTGACGGGATTGGGTCGGTTGACTGAGGCGGTGAGGGAATGCGAGGAGGCTGTGAGATTGGATTCCAGTTATGGAAGAGCGCACCAGCGTCTTGCTTCTCTTTTTCTCCGGTTAGGACAAGTTGACAATGCGAGGAAGCACCTATTCGGTCATGGGCTGCAGCCGGATCCTTCTGAGTTGCAAAAGCTACAATCGTTGGAGAAGCATATCAACAAATGTACTGATTTTAGAAGGATAGGTGATTGGAAAAGTACCCTCAGGGAAGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTTCTCCTCAGCTCTTTATGTGTAGAGCGGAAGCCCTTTTAAAGCTCCACCAAATTGATGATGCACAATCGATTATGTTAGCTATTCCAAAAATAGAATCACATTCTAAATCCTCATCTCAGGCAAGGTTTTTTGGGATGCTTTCTGAAGCTTATTCTTTCGTGGTTAGAGCTCAGATTGAGATGGCCTTGGGAAGGTTTGAGAATGCAGTTACAGCTGCCGAGAAAGCTGGCCTGATTGATCCCCGAAACATTGAAGTTGCTGTTTTGCTCAGTAATGTAAGGATGGTGGCCAGAGCTCGAGCTCGTGGAAATGATCTTTTCAAATCTGAAAGGTTCACCGAGGCTTCCTCTGCATATGAGGAAGGTTTAAGGCTGGACCCTTCAAATGCTGTTCTCCATTGCAATAGAGCTGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAGGACTGCAATCAAGCTTTACACATCCAACCAAATTACACAAAGGCCCTTCTTCGAAGGGCTGCCTCAAATAGCAAGCTGGAAAGGTGGGAAGAAGCAGTCAGAGATTATGAAATCTTACGAAGAGAACTTCCAGATGACAATGAAGTTGCTGAAGCGCATTTCCATGTGTACGTTGCATTAAAGAAATCTCGTGGGGAAGAAGTTCATAATTTGAAATTTGGTGGTGAAGTGGAAGGAGTATCTGGTCTTGAGCACTTTAGAGCTGCAATTTCTTTACCAGGTGTATCTGTTGTCCATTTTGAAATTGAATCTGACTCGCAATGTAAACAATTATCACCATTTGTGAATACACTGTGCAGTCGATATCCTTCTGTTAACTTCCTCAAGGTGGATATTCAAAAAAGCCCAGCAATTGCAGCCGCTGAGAATGTTAGGTTGGTACCAACTTTCAAGATCTACAAAAATGGCAGCCGTGTGAAGGAAATTGTTTGCCCCAGCCGTGATATGTTGGAACACTCTGTGAGGCATTACAGCACTTAG 2097 0.4874 MSHSEKPDSELGLHALRERFRESVSCEANKPDFRELDLGSPVSPLRTRKSGPAASGLTTTTSSSSSSSGSVSGRHGRNPVSKRSDSGANNHSGELSVSSESSPTAAESLRSGGNARNFKPGYARSDAGTTPPLIYSGQSSSVTSPALNVLPTGNICPTGKFLKTGMASNRTTRTDVLGSGMANYGHGSIMRGGGTSKHTAGEAASTANARAVGSGGFKKSAPGLDPEEVKRAANEQYRRGNFTEALNLYDLAIEVSPGNAAYRSNRAAALTGLGRLTEAVRECEEAVRLDSSYGRAHQRLASLFLRLGQVDNARKHLFGHGLQPDPSELQKLQSLEKHINKCTDFRRIGDWKSTLREVDAAVAAGADSSPQLFMCRAEALLKLHQIDDAQSIMLAIPKIESHSKSSSQARFFGMLSEAYSFVVRAQIEMALGRFENAVTAAEKAGLIDPRNIEVAVLLSNVRMVARARARGNDLFKSERFTEASSAYEEGLRLDPSNAVLHCNRAACWFKLGQWERSIEDCNQALHIQPNYTKALLRRAASNSKLERWEEAVRDYEILRRELPDDNEVAEAHFHVYVALKKSRGEEVHNLKFGGEVEGVSGLEHFRAAISLPGVSVVHFEIESDSQCKQLSPFVNTLCSRYPSVNFLKVDIQKSPAIAAAENVRLVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYST 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3215 698 Pfam Tetratricopeptide repeat 232 291 - -
Acco01g3215 698 MobiDBLite consensus disorder prediction 25 147 - -
Acco01g3215 698 SUPERFAMILY Thioredoxin-like 502 695 IPR036249 -
Acco01g3215 698 SMART tpr_5 260 293 IPR019734 GO:0005515
Acco01g3215 698 SMART tpr_5 464 497 IPR019734 GO:0005515
Acco01g3215 698 SMART tpr_5 498 531 IPR019734 GO:0005515
Acco01g3215 698 SMART tpr_5 418 451 IPR019734 GO:0005515
Acco01g3215 698 SMART tpr_5 532 565 IPR019734 GO:0005515
Acco01g3215 698 SMART tpr_5 226 259 IPR019734 GO:0005515
Acco01g3215 698 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 20 695 IPR044534 -
Acco01g3215 698 Pfam Thioredoxin 605 689 IPR013766 -
Acco01g3215 698 ProSiteProfiles TPR repeat profile. 226 259 IPR019734 GO:0005515
Acco01g3215 698 ProSiteProfiles TPR repeat profile. 464 497 IPR019734 GO:0005515
Acco01g3215 698 CDD TRX_family 603 690 - -
Acco01g3215 698 Gene3D Tetratricopeptide repeat domain 225 584 IPR011990 GO:0005515
Acco01g3215 698 MobiDBLite consensus disorder prediction 52 111 - -
Acco01g3215 698 SUPERFAMILY TPR-like 226 454 IPR011990 GO:0005515
Acco01g3215 698 Pfam Tetratricopeptide repeat 498 531 IPR001440 GO:0005515
Acco01g3215 698 Gene3D Glutaredoxin 592 697 - -
Acco01g3215 698 FunFam TPR repeat-containing thioredoxin TTL4 590 697 - -
Acco01g3215 698 MobiDBLite consensus disorder prediction 131 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3215 Acco-ChrAcco01 49557110 49560233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3215 240 562 Glycosyltransferase AT3G04240 22.018 5.31e-10 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3215 01 49557110 49560233 Acco08g1138 08 11683865 11687194 CCT
Acco01g3215 01 49557110 49560233 Acco01g3215 01 49557110 49560233 ECH