Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3176 ATGAAGATTCAATGCAGTGTGTGTGAAGCTTCGGAGGCTAAGGTTTTGTGTTGCGCCGACGACGCGGCTCTGTGTTGGGAATGTGACGAGAAGGTCCATGCCGCTAATAAGCTTGCCGGCAAGCACCAGAGAGTACCTCTTTCTTCCTCTGGCTCTAACATGCCCAAATGTGATATTTGTCAGGAATCATTTGGTTATTTCTTCTGTCTAGAGGACAGGGCTTTATTCTGCAGAAAATGTGATGTGGCAATACACACAGCAAATTCCTATGTGTCCACTCATCAGAGGTTTCTGCTGGCTGGCATAAGAGTAGGACTTGAAGCAACTGAGCCCGGTGCTTCCTCATCTTCTGCTAAGTCACAGTCTGAGGAGAAGATGTCAGATACAAAGTCATCTTCTGTTTCTAGAAGGGTTTCCTCAGTACCTGAGTCATCTGAACACAATGAAGTTATACCTGCCCAAGGTGGAGGAGGAGATGGGCAGTTTCCGCCTTCTAAGGGGACTCATGGTGGTGGTTCAGCTCCTGCTAACATATCAAACTGGCCCATTGATGGATTTTTTGGTTTAAATGAATTCACTCAGAATTACAATTGCATGGACAATGAACCATCCAAGATGATAAAGTTCCATGACGTTCCTTTTAACATCATCTTTATTGGTGAATTTTTGCATGATGACAGTGGGAAGCCTGGGGATTCTGATTCTCCTGGTTTTAAATCCAGTGAAGAGGAAATAGATGAAGAAGAAGATGATGATGATGATGACTGCTTAGGGCGGTTTTCGGATTCATCTTGGAAAGTTCCCCAAATCTCTTCCCCTCCTACTGCTTCAGGATTATATTGGCCTAAAGACACTCAATATAAACCTTAG 870 0.4414 MKIQCSVCEASEAKVLCCADDAALCWECDEKVHAANKLAGKHQRVPLSSSGSNMPKCDICQESFGYFFCLEDRALFCRKCDVAIHTANSYVSTHQRFLLAGIRVGLEATEPGASSSSAKSQSEEKMSDTKSSSVSRRVSSVPESSEHNEVIPAQGGGGDGQFPPSKGTHGGGSAPANISNWPIDGFFGLNEFTQNYNCMDNEPSKMIKFHDVPFNIIFIGEFLHDDSGKPGDSDSPGFKSSEEEIDEEEDDDDDDCLGRFSDSSWKVPQISSPPTASGLYWPKDTQYKP 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3176 289 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Acco01g3176 289 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Acco01g3176 289 MobiDBLite consensus disorder prediction 264 279 - -
Acco01g3176 289 CDD Bbox1_BBX-like 5 47 - -
Acco01g3176 289 MobiDBLite consensus disorder prediction 132 147 - -
Acco01g3176 289 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Acco01g3176 289 MobiDBLite consensus disorder prediction 241 257 - -
Acco01g3176 289 Gene3D Classic Zinc Finger 1 94 - -
Acco01g3176 289 FunFam B-box zinc finger protein 22 1 93 - -
Acco01g3176 289 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 281 - -
Acco01g3176 289 SMART bboxneu5 52 99 IPR000315 GO:0008270
Acco01g3176 289 SMART bboxneu5 4 47 IPR000315 GO:0008270
Acco01g3176 289 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Acco01g3176 289 MobiDBLite consensus disorder prediction 225 240 - -
Acco01g3176 289 MobiDBLite consensus disorder prediction 225 289 - -
Acco01g3176 289 CDD Bbox1_BBX-like 56 99 - -
Acco01g3176 289 MobiDBLite consensus disorder prediction 110 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3176 Acco-ChrAcco01 49246586 49248436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3176 1 283 C2C2-CO-like Transcription Factor Family AT1G78600 48.658 6.58e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Acco01g3176 zf-B_box 7.7e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3176 01 49246586 49248436 Acco01g3176 01 49246586 49248436 ECH