Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3123 ATGGGATGGACCCGCTTCTCTCATAGCCTCCAACCCGGCCAACTTTGCCAAGGAGATCAAGTACAAAGCGTCTGCGAGAGGCTATGGGAGCATTACGCGGTGGAGATTCGTGATCCTAGCAAGAAAACAAGTGTTTGGATGGGAACTTTTGATACCGCTGAGGAGGCGGCATATGCTGACGACGCAGCGGCCAAAGAGTTTTGTGGCACTAAGGCCAAGACTAATCTCTCTTTTCTTTCTAAACTTCGAACAACAGTAGCATGCTTGAATCATTATTGCCGTCACCAGTTGCTACTCCCTTGTCGCTAG 309 0.4951 MGWTRFSHSLQPGQLCQGDQVQSVCERLWEHYAVEIRDPSKKTSVWMGTFDTAEEAAYADDAAAKEFCGTKAKTNLSFLSKLRTTVACLNHYCRHQLLLPCR 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3123 102 Gene3D AP2/ERF domain 21 78 IPR036955 GO:0003700|GO:0006355
Acco01g3123 102 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 24 78 - -
Acco01g3123 102 Pfam AP2 domain 22 69 IPR001471 GO:0003700|GO:0006355
Acco01g3123 102 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Acco01g3123 102 SUPERFAMILY DNA-binding domain 24 77 IPR016177 GO:0003677
Acco01g3123 102 SMART rav1_2 24 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3123 Acco-ChrAcco01 48726642 48727140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3123 22 101 AP2-EREBP Transcription Factor Family AT5G44210 45.745 1.01e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco01g3123 AP2 8.1e-07 CL0081