Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3117 ATGCTATCAAAGGACCCAGAGAGCGATGCGATTGCGGTGGTCGTGGAGGCGTTGTTACTGCTGTTCAGGGTTTATCTCTCCGACGACGACGACGGTGACGGCGTCCAATGCACCGGAGCACGCGGCCGAAGGTCGTCGTCGTTGATGGCCTTGCAATTGCACATGACTTGGCTGCCGAGTCTTCTCACTCAGAAGCGCAAGACCGATCACCCTGTGGGCCTCAGGAACCTCGGCAACTCCTGCTACCTCAACAGCGTCCTCCAGTGTCTCACCTACACTCCTCCTCTTGCCAATTTCTGTCTTCGAAACCAGCACTCTTCCCTCTGCGATTCCGCTTCCGAGGAAAGGAAGCGGGACTGCCCCTTTTGTCTGCTAGAAAAACGGATTGTTCGTTCTCTGAGAGCGGATCTCGCCCAAGACGCTCCGTCGAAGATCCAGAGCTGTCTCAGGATTTTCGCCGAGCACTTTCGTTGTGGTCGTCAGGAGGATGCTCACGAGTTCCTGAGGTACGTTATAGATGCTTGCCACAACACCTGCCTTCGCCTCAAGAAGTTGAAGCGTAAGGGGGGCGATACTGCTGTCAATGGTAACGGCAGCAATACTGTGGTTAAGGAGATATTTGGGGGAGCCTTGCAGAGCCAGGTGAAGTGTCTCTCTTGTGGCTATGAGTCCAATAAGGTGGATGAGGTTATGGATATCAGTCTTGATGTTTTGCATAGCAATTCGCTTAAGGATGCTATGCTGAGGTTCTTTCAGCCTGAGATTTTGGATGGGAATAATAAGTACAAATGTGACAATTGCAAGAAATTGGTGGCGGCTAAGAAGCAAATGTCTATACATGAAGCCCCTAATGTCCTTGTAATACAACTTAAGAGATTTGAGGGCATATTGGGTGGGAAGATCGATAAGGCTGTTGCATTTGAAGACATTTTGGTGCTTTCTAGCTTCATGTGCAAAGCAAGCCAGGATCCAATGCCAGAATACAGGCTCTTTGGTACTATTGTCCATTCTGGATACTCCCCAGAATCTGGCCATTATTATGCTTATATAAAGGATGCTAAGGGCCGATGGTATCGCTGTGATGATTCTTCTGTCTCACTTTCAACCCTGAAAGAAGTTTTGTCAGAAAAGGTTTACATACTTTTTTTTTCTCGCACTAACCAAAGGCCAGTGCCAATTAGAAATGGTTTTGCTTCGAATGGTTCAAGGTCTCATGACTCTCATCACATTAATGGAAGTCAGGCGACTGAATGTCCAAAATCTGATGCACCAACAAAAGTTGTGCTTGCAAAATTAAGTTCTCAACAATCTTCTTGGAAGGACGTGCCTGCCATGTCTAAGAATGATAAAGAGCTTTCTAGCCCACGAATAAAGTTTAATTTTAATGGAAATTCTACTTCCAAAAGAGGCCATGAAAGTTTGAATGGGAAAGTTGATGTTCTGTTGCCTGTGCTAACTAATGGACATGTAAAAGACTCAGTTGCTTTGGAGAATGCTAAGAAAGATTCTTCATCAATCAGGAATGGCTTTGATAAAAATAAAGTAGATGCTGTTGACAACTTAAAAAGGAAGGATCCGTTGTTAGCAAATAAAAACAATGGTATTCATTCTGTTGAAAAATATCCTAGAAAGTCAGATGTTATGGATGACACTGGAAGAAGCAGAGCAATATCAGATAAAGGACCTGACAACTATAAGCTAGAAGGCAATGGTCTCAACAACAAACCTAAATCATTAAAGAATAAGAGGAAGGAACCAGCGGCAACGAGCATTTTGCTTGCACATGATGATCAGTCCAAAGCAAGAGTTCAGGAACTGAAAGACATGCTTGAAAAAGAGGCAAAGTCAGTTTTAAGATCATGTGGCTGGACAGATAAGGCGCATGGCTTTATGTCTTCCAGAAAGAGGTTACATGCACAAGAAGCAGGAAATTCATCAAGTGAACATGAAATAAAGAAGTTGCTAATAAGCGAGGCCAAGGGGGCTTTCATATCACAGATCCCCGAGCCATTGAAAGAGGATCTGATTGAAGCATGCTTGTTGGCGTACATGTTTCTGGGCCTTGATGTTCATAATTTGTATTACATATTGTCTTTGTGA 2100 0.4433 MLSKDPESDAIAVVVEALLLLFRVYLSDDDDGDGVQCTGARGRRSSSLMALQLHMTWLPSLLTQKRKTDHPVGLRNLGNSCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASEERKRDCPFCLLEKRIVRSLRADLAQDAPSKIQSCLRIFAEHFRCGRQEDAHEFLRYVIDACHNTCLRLKKLKRKGGDTAVNGNGSNTVVKEIFGGALQSQVKCLSCGYESNKVDEVMDISLDVLHSNSLKDAMLRFFQPEILDGNNKYKCDNCKKLVAAKKQMSIHEAPNVLVIQLKRFEGILGGKIDKAVAFEDILVLSSFMCKASQDPMPEYRLFGTIVHSGYSPESGHYYAYIKDAKGRWYRCDDSSVSLSTLKEVLSEKVYILFFSRTNQRPVPIRNGFASNGSRSHDSHHINGSQATECPKSDAPTKVVLAKLSSQQSSWKDVPAMSKNDKELSSPRIKFNFNGNSTSKRGHESLNGKVDVLLPVLTNGHVKDSVALENAKKDSSSIRNGFDKNKVDAVDNLKRKDPLLANKNNGIHSVEKYPRKSDVMDDTGRSRAISDKGPDNYKLEGNGLNNKPKSLKNKRKEPAATSILLAHDDQSKARVQELKDMLEKEAKSVLRSCGWTDKAHGFMSSRKRLHAQEAGNSSSEHEIKKLLISEAKGAFISQIPEPLKEDLIEACLLAYMFLGLDVHNLYYILSL 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3117 699 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 72 386 IPR028889 -
Acco01g3117 699 Gene3D Cysteine proteinases 65 388 - -
Acco01g3117 699 MobiDBLite consensus disorder prediction 537 562 - -
Acco01g3117 699 MobiDBLite consensus disorder prediction 400 421 - -
Acco01g3117 699 FunFam Ubiquitin carboxyl-terminal hydrolase 25 66 388 - -
Acco01g3117 699 MobiDBLite consensus disorder prediction 527 585 - -
Acco01g3117 699 CDD Peptidase_C19E 71 384 - -
Acco01g3117 699 Pfam Ubiquitin carboxyl-terminal hydrolase 72 383 IPR001394 GO:0004843|GO:0016579
Acco01g3117 699 SUPERFAMILY Cysteine proteinases 65 385 IPR038765 -
Acco01g3117 699 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 328 346 IPR018200 GO:0004843|GO:0006511
Acco01g3117 699 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 57 389 - -
Acco01g3117 699 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 73 88 IPR018200 GO:0004843|GO:0006511
Acco01g3117 699 MobiDBLite consensus disorder prediction 400 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3117 Acco-ChrAcco01 48672010 48678662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3117 71 395 Miscellaneous Gene Families AT2G24640 38.066 1.61e-62 215
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3117 01 48672010 48678662 Acco01g3117 01 48672010 48678662 ECH