LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g3093	ATGGAAGAATATACCTCTTTCCCTTGTGCTGATACAGATCTCGACCTCAGCTTCACCAGCACCACCTCCGCCACCTCTGACCGGACCTTTGCTTCCTCCAGTGCTCGCACCAGCTTGGCTCGTAGCAGTTTGACTCTCAGCTTCAACGAACGTCTGTCCACTGCCTCCACCGCCACCGGAACTTCCTCTTCCACACTATTCCTCCGACCACATCGGACCTCTGATCCTCATTGGTCTGCCATCAAAGCTGCCACCAATCTCTCTTCAGACGGCGCCCTCCACCTCCACCACCTCAAGCTCCTACGCCACCTAGGCACGGGGAATCTCGGACGAGTATTCCTCTGCCGTCTTCGTGACTACGATCATGCAAACTTCGCTCTCAAGGTTGTCGATAAGGACTTGCTTAGCAGCAAGAAGCTCTCTCATGTGCAAATGGAGGGTGAGATCCTGTCCATGCTGGACCATCCTTTTCTTCCTACGCTCTACGCCCGATTGGAGGTCTCTCATTACACGTGTCTGTTGATCGATTACTGCCCTGGCGGAGACCTCCACTCTCTCCTACGAAAACAGCCCGGAAACCGGCTACCGGTCCAGGCGGCTCGGTTCTTTGCGGCGGAGGTGCTGGTGGCTTTGGAATATTTGCATGCGCTTGGCATCGTGTATAGGGATCTGAAACCGGAGAACGTTCTATTGCGTGAAGACGGCCACGTCATGCTGTCCGACTTCGATTTGTGCTTCAAGGCCGACGCGGTCCCCTCATTCGAGTGTCGTGCGGGGCCTACTAAGAGGAAGAAGCGCCTGTCGTGCAACTGTTTCAGTGGCCGCAGAACGAGATCGCCGGAGCAAATGATCATGGAAGCGGAGTTCGTGGCGGAGCCAAACTCTGCTTTCTCGAGGTCCTGCGTTGGGACGCACGAGTACTTGGCTCCGGAGCTGGTCTCCGGTAACGGCCACGGCAACGGCGTGGACTGGTGGGCGTTTGGGGTGTTCATTTACGAGTTGTTGTACGGGACGACGCCGTTTAAAGGGTGGAACAAAGAGAGCACCCTGCGCAATATAGCATCGAGTCGAAACGTGAGCTTCCCCGTGGCTGAAGTAGAGGAAGAAGGAATGGCGGACGCGAGGGATTTGATTGAGAAACTGTTGGTGAAGGACCCAAGGACAAGGCTAGGATGCGCCAGGGGTGCGACGGATATTAAACGTCACGCGTTTTTTGGCGGGATCAAGTGGCCGTTGATCCGAACGTACCGGCCACCGGAGGTCCGGGGGCTAACGACCAAGAAGGGGAGGTTGCACGTGAGCAGTCACGTGACGCATAGGAGAAGAAGGTGGTGGTGGAGGGGGCTTGATTATGTCCTGAAGAGAAGTAGTAAGGGACATAAGTATAACTTAATCTCAAACTACAGTAATGGTAATTACTATCGTTACGTTAATAGTAATAATAAGGCTAGCTAG	1455	0.5443	MEEYTSFPCADTDLDLSFTSTTSATSDRTFASSSARTSLARSSLTLSFNERLSTASTATGTSSSTLFLRPHRTSDPHWSAIKAATNLSSDGALHLHHLKLLRHLGTGNLGRVFLCRLRDYDHANFALKVVDKDLLSSKKLSHVQMEGEILSMLDHPFLPTLYARLEVSHYTCLLIDYCPGGDLHSLLRKQPGNRLPVQAARFFAAEVLVALEYLHALGIVYRDLKPENVLLREDGHVMLSDFDLCFKADAVPSFECRAGPTKRKKRLSCNCFSGRRTRSPEQMIMEAEFVAEPNSAFSRSCVGTHEYLAPELVSGNGHGNGVDWWAFGVFIYELLYGTTPFKGWNKESTLRNIASSRNVSFPVAEVEEEGMADARDLIEKLLVKDPRTRLGCARGATDIKRHAFFGGIKWPLIRTYRPPEVRGLTTKKGRLHVSSHVTHRRRRWWWRGLDYVLKRSSKGHKYNLISNYSNGNYYRYVNSNNKAS	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g3093	484	SMART	serkin_6	98	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g3093	484	Pfam	Protein kinase domain	100	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g3093	484	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	219	231	IPR008271	GO:0004672\|GO:0006468
	Acco01g3093	484	FunFam	Serine/threonine-protein kinase WAG2	182	248	-	-
	Acco01g3093	484	FunFam	Serine/threonine-protein kinase OXI1	296	423	-	-
	Acco01g3093	484	PANTHER	FLIPPASE KINASE 1-RELATED	36	423	-	-
	Acco01g3093	484	SUPERFAMILY	Protein kinase-like (PK-like)	75	421	IPR011009	-
	Acco01g3093	484	Gene3D	Phosphorylase Kinase; domain 1	96	181	-	-
	Acco01g3093	484	ProSiteProfiles	Protein kinase domain profile.	98	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g3093	484	CDD	STKc_phototropin_like	105	421	-	-
	Acco01g3093	484	Gene3D	Transferase(Phosphotransferase) domain 1	182	249	-	-
	Acco01g3093	484	Gene3D	Transferase(Phosphotransferase) domain 1	298	423	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g3093	Acco-ChrAcco01	48463240	48464694	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g3093	3	477	AGC Kinase Gene Family	AT3G14370	66.189	0.0	583

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Acco01g3093		Pkinase	5e-54	CL0016