Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3076 ATGAGCAGCATAAGCACGGTAGAGGCAAAGTTGCCTCCTGGGTTCAGGTTTCATCCCAGAGATGAAGAACTTGTATGTGATTACTTAATGAAGAAGGTGACACACTGTGACTCCTCTCTCATGATTGATGTTGATCTTAACAAGTGCGAACCATGGGACATTCCTGAGGTAGCATGTGTAGGAGGGAAGGAGTGGTATTTCTATACACAGAGAGACCGCAAATACGCCACTGGCCTACGCACCAATCGTGCCACTGCCTCAGGCTATTGGAAGGCCACAGGGAAGGATAGGCCTATCTTTCGCAAGGGCACTCTTGTTGGTATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCGCCTAAAGGGAGAAAGACCGAATGGGTCATGCATGAGTTTCGCCTTGAAGGTCCCATTGGCCCTCCTAAACTTTCTTCAGCTAAGGAGGATTGGGTTTTGTGCAGGGCGCTCCTAAAAAACAGAGATCCTTCAGCAAAACAGAGCATCGGAAGCTGCTACAACGACACAGGCTGTTCATCTCTACCTGCATTAATGGATTCTTACATCAGTTTCGATCAACAGGCTCAAGCTCAAACTCATCAGGATGATTACGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAGATCCATACAAACCCTAACTTCAACCACACAAGCAGTACAAGCATTATGGAGCCAAATTTAGTAGTACCTGTCAAGAACCACAGTGTAACCGCCACATACTGCGGAGGAACGACGCCATACGATCTGGATTCGTCTTGCTTGGACCCTAATTTGAACTTCGATGGTGATAGTAGGAAGGTATTGAAAGCTTTCGTGGATCAGCTCGCTAAGATCGAGAGAAATCAACAAAGTCAGATTACTACTCTCAAAGGTTCGCCAAGCTTAGCAGAAGCAAGTTCTGAGAGTTTTTTATCTGATGTGTGCATGCCAAACTTGTGGAACACTTTCTGA 972 0.463 MSSISTVEAKLPPGFRFHPRDEELVCDYLMKKVTHCDSSLMIDVDLNKCEPWDIPEVACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPIFRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRLEGPIGPPKLSSAKEDWVLCRALLKNRDPSAKQSIGSCYNDTGCSSLPALMDSYISFDQQAQAQTHQDDYEQVPCFSIFSQIHTNPNFNHTSSTSIMEPNLVVPVKNHSVTATYCGGTTPYDLDSSCLDPNLNFDGDSRKVLKAFVDQLAKIERNQQSQITTLKGSPSLAEASSESFLSDVCMPNLWNTF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3076 323 Gene3D NAC domain 20 162 IPR036093 GO:0003677|GO:0006355
Acco01g3076 323 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 222 - -
Acco01g3076 323 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Acco01g3076 323 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Acco01g3076 323 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Acco01g3076 323 FunFam NAC domain-containing protein 100-like 20 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3076 Acco-ChrAcco01 48304720 48308685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3076 2 321 NAC Transcription Factor Family AT1G56010 55.090 6.21e-116 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco01g3076 NAM 1.7e-36 No_clan