LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g3072	ATGACGTCTTGTTTTTCTTTCTTATTTGGTAGGAAGGTTACATCTTCAGTGATACGAGATCCTGAAATTGATGAAGAATTAGCCGGTATTCACAATGTTATTCTTTATACCTACAAAGAATTAAGTATTGCCACTGAGGATTTCAGTCCAGATAACAAAGTTGGAGAGGGAGGCTTTGGTTCCGTCTACAAGGGAAAGCTAAAAGATGGAAAAATTGCTGCTATTAAAGTCCTTGCAGCTGAATCAAGTCAAGGGGTGAATGAATTCTTGACAGAAATCAAAGTGATCTCAGAAATAGAGCATGAAAATTTGGTCAAGTTATATGGTTGTTGTGTGGAAGGCAATCACAGAATATTAGTCTACAATTACCTTGAGAACAACAGTCTAGCACAAACACTTATAGGTGGACGACACAGCAATATTTTCTTCGACTGGCAAACACGGGCTAGAATATGCATTGGGATTGCCCGTGGGCTTGCCTTTCTTCATGAGGCAGTAAAACCACATATTGTTCATAGGGATATAAAAGCAAGCAACATTCTCCTTGACAAAGACCTTACACCAAAGATTTCGGATTTTGGGCTTGCAAAGCTTATCCCACCAAACATGACTCACGTCAGCACACGTGTGGCAGGGACAATAGGTTATCTGGCACCAGAATATGCAGTAAGAGGGCAGGTGAATAGAAAAGTAGACATTTACAGTTTCGGTGTACTTCTTTTGGAGATTGTCTGTGGGAGATGTAATACAAATACACGATTGCCATTGGAAGATCAATACCTTCTAGAAAGGACATGGAAACATTATCAGGAAAGGATATTGGTAGGGCTGGTAGACACATCACTAAATGGGGAATTCGATGCCGAGGAGGCTTGCAAGTTTCTGAAAGTTGGCCTTCTTTGTACTCAGGAAGTTCCGAAACTCCGGCCATCCATGTCTTCGGTGGTCAAGATGCTCACGGGTAAAATGGACGTCGATGACAGTAACATAACAGAACCAGGCTTGATTTCTGACTATATGGACCTGAAAGTTGGAGGAAAACCAAAAAATGAAGTTGATATGAAAACATTATCTTCATATAATAACACCTCGGCCTCGGACAACCAGGACACTACGTTATCGATTGCTTCAACCGCTACTACTACAACCTTTGCCAGATAA	1161	0.41	MTSCFSFLFGRKVTSSVIRDPEIDEELAGIHNVILYTYKELSIATEDFSPDNKVGEGGFGSVYKGKLKDGKIAAIKVLAAESSQGVNEFLTEIKVISEIEHENLVKLYGCCVEGNHRILVYNYLENNSLAQTLIGGRHSNIFFDWQTRARICIGIARGLAFLHEAVKPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPPNMTHVSTRVAGTIGYLAPEYAVRGQVNRKVDIYSFGVLLLEIVCGRCNTNTRLPLEDQYLLERTWKHYQERILVGLVDTSLNGEFDAEEACKFLKVGLLCTQEVPKLRPSMSSVVKMLTGKMDVDDSNITEPGLISDYMDLKVGGKPKNEVDMKTLSSYNNTSASDNQDTTLSIASTATTTTFAR	386

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g3072	386	Gene3D	Transferase(Phosphotransferase) domain 1	124	332	-	-
	Acco01g3072	386	Pfam	Protein kinase domain	51	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g3072	386	ProSiteProfiles	Protein kinase domain profile.	48	335	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g3072	386	Gene3D	Phosphorylase Kinase; domain 1	14	123	-	-
	Acco01g3072	386	CDD	STKc_IRAK	54	321	-	-
	Acco01g3072	386	SMART	serkin_6	48	319	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g3072	386	FunFam	cold-responsive protein kinase 1	19	123	-	-
	Acco01g3072	386	ProSitePatterns	Protein kinases ATP-binding region signature.	54	76	IPR017441	GO:0005524
	Acco01g3072	386	FunFam	cold-responsive protein kinase 1	124	335	-	-
	Acco01g3072	386	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	170	182	IPR008271	GO:0004672\|GO:0006468
	Acco01g3072	386	SUPERFAMILY	Protein kinase-like (PK-like)	30	320	IPR011009	-
	Acco01g3072	386	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	32	353	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g3072	Acco-ChrAcco01	48274375	48277472	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g3072	24	325	Receptor kinase-like Gene Family	AT1G53430	55.116	6.67e-107	335

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Acco01g3072		Pkinase	5.2e-48	CL0016