Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3048 ATGGGTGGCGAAGAATTGAGGAAGCACGAAGGGAGCTTTATGGAAGAAGAGGATGAAGAAGAAGTAGAACTTCCAGGGTTTCGGTTTCATCCCACAGATGAAGAACTCGTGGGGTTCTATCTTCGAAGGCAGCTTGACAAGAAACCAATCAAGATCGAACTCATCAAGCAGATCGATATCTACAAATACGACCCTTGGGACCTTCCAAAAGCGAGCTGCACAGGAGGGGAGAAGGAGTGGTATTTTTTCTGCAAGAGAGGGAGAAAGTACAGGAACAGTATAAGGCCGAATAGAGTAACGGGGTCAGGCTTCTGGAAAGCTACAGGGATAGACAAGCCTATTGCAGGACAAGGTGGTGAGTGCATTGGCCTCAAGAAAACTCTTGTTTACTACAGAGGCAGTGCTGGCAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTCCCTTCTCTTCATGACTCCGCCAGCCCCACCAACGCCACCACGGCCGCCGCCACCAACACCACCATTGCCCAACAAGCTGAAATCTGGACATTGTGCCGAATATTCAAGCGAAATGTTCCACCCAGGAAGCACATAACAGACTGGAGATCATCATCACTTACCAAACGCCAATATTCTTCAGTCGACAAGAACGCATCAAGCACCGTGGAGATAGATCATACGTCTAACTACTACTCTAATAGCAAAGAAGCTTACATAGATTTTGGAGGAAGCCATAATCATGGTCATCATGATTATTCTCAGCTTAATGATCATCATCATGAGCAGAAACCAGCAGTCTTCGATACTATCAGTGATCAAAGGAACAACGACAACAACAGTAATAATCAGCTCAGGATCATGAACTCATCCCAGGTAGCAGCACAACAACAGCCACAGTTCGTTAATGCTTCTTCTTCTAACTTGTGGATTAATAACCCTTCTGCTGCCGCTGCCGCCACCGCCAGCGACTTCCTCACGTATGAGAATTGGGATGAACTTGGATCAGTTGTCAGGTTTGCTCTTGATTCCTCTATCTTGTAA 1032 0.4641 MGGEELRKHEGSFMEEEDEEEVELPGFRFHPTDEELVGFYLRRQLDKKPIKIELIKQIDIYKYDPWDLPKASCTGGEKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIAGQGGECIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSLHDSASPTNATTAAATNTTIAQQAEIWTLCRIFKRNVPPRKHITDWRSSSLTKRQYSSVDKNASSTVEIDHTSNYYSNSKEAYIDFGGSHNHGHHDYSQLNDHHHEQKPAVFDTISDQRNNDNNSNNQLRIMNSSQVAAQQQPQFVNASSSNLWINNPSAAAAATASDFLTYENWDELGSVVRFALDSSIL 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3048 343 SUPERFAMILY NAC domain 22 187 IPR036093 GO:0003677|GO:0006355
Acco01g3048 343 FunFam NAC domain-containing protein 35 32 190 - -
Acco01g3048 343 Pfam No apical meristem (NAM) protein 25 150 IPR003441 GO:0003677|GO:0006355
Acco01g3048 343 ProSiteProfiles NAC domain profile. 23 187 IPR003441 GO:0003677|GO:0006355
Acco01g3048 343 Gene3D NAC domain 32 189 IPR036093 GO:0003677|GO:0006355
Acco01g3048 343 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3048 Acco-ChrAcco01 48022388 48024429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3048 14 187 NAC Transcription Factor Family AT5G39820 57.979 1.02e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco01g3048 NAM 1.7e-35 No_clan