Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3045 ATGAGAGAGGGTGGTAGATTAAAGCAAGGCACAATGTCGCCATGTGCAGCTTGCAAGCTTCTGAGAAGAAGATGTGCACAGGACTGTGTGTTTGCTCCTTATTTTCCAGCAGATGAACCCCAGAAATTTGCCAGTGTTCACAAGGTTTTTGGGGCTAGCAATGTCAACAAAATGTTACAGGAACTACCAGAGCATCAAAGGAGTGATGCAGTGAGTTCAATGGTGTATGAAGCAAACGCGAGAGTGAGAGACCCTGTTTATGGGTGTGTTGGTGCCATTTCTTCTCTTCAACACCAAGTCGATGTTCTTCAAACCCAACTCGCTCTTGCTCAAGCTGAAGTTGTTCACATGAGATCATTAAGTCAGTTATCTTCTTCTTCATCATCTCCACCACCAACAACAACAACTGTGACTGATATGCAGCCTTCCACTTCATCACCAGATCATCATCATCCTCATCACAGTAGCTTCAATAAAATAATGTCACCTTCATCGTCAAGCAGGCTAAGTGCCAAGTCCTTTTTTGCCATGGACGTGGGCGAGTCATTGTGGTCTTGCTAG 561 0.4474 MREGGRLKQGTMSPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQHQVDVLQTQLALAQAEVVHMRSLSQLSSSSSSPPPTTTTVTDMQPSTSSPDHHHPHHSSFNKIMSPSSSSRLSAKSFFAMDVGESLWSC 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3045 186 Coils Coil 93 113 - -
Acco01g3045 186 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Acco01g3045 186 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Acco01g3045 186 MobiDBLite consensus disorder prediction 121 163 - -
Acco01g3045 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 150 - -
Acco01g3045 186 MobiDBLite consensus disorder prediction 121 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3045 Acco-ChrAcco01 47971121 47975375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3045 1 186 AS2 family AT1G31320 60.606 8.62e-66 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Acco01g3045 LOB 1.4e-43 No_clan