Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3041 ATGATCGACGCTGGATCGACCGCCATGGCCACTTCGCCGTTGAAAAAGATCGAACGCGCCCACCTGCTGTACCGCGACGGACGGTATGGCGACGCGCTAGGTTTCTACACGGAGGCTATTGGGATGGCTAAGACTAAGGCTCAAAAGATCGCTTTGCATAGCAATAGGGCTGCTTGTTATCTGAAGCTTCAAGATTTCAAGAAGGCTGCGGAAGAATGTACCTCAGTGCTTGAGCTAGATTATGAGCACAGTGGGGCATTGATGCTGCGGGCTCAAACACTAGTCACCCTTAAAGAGTACAATTCAGCACTTTTTGATGTCAACCGGCTCCTAGAGATGGATCCTTCCTCAGAGGTGTATCAAAATCTTCAAGCTCGTTTAAGGACACAATTGTCACTTGCTCCAATACCAGAGTTAGAAGAGGAGTTTGAGGAACAGGGAGATGATGAAGATGAGGTGACTGTAAAAGGAAATAATAAATGGGAAAAATCCCAAGAGAAAAATGTTGGAAGAGATCAGAAAGATGAGCTTGACAAGGCTGCTATTACTAATGCTGAAATAGACTCCAAGGTATCATCTGAACAAAGAAGAGAGCAAAACTCTGAGCCAAAAACTTCCACGCCTGAGACAATTGCCAAAGCACCACAAGAGGAACCGGCTGAGCAACATTCCAAAGCATGGAAATCAATTCCAAAACCAAAAGGGCATTCAGCTTTAAACTATGCACGATGGGACAGTGTTGAAGATGATTCAAGTGAAGATGATGACAACGATGATGATGAAGATGAAGAAGAATCTCAGCCCCAGTACCGATTTCGTGTAAGAACCGTAGGTGGAAGTACTGGCCTTTCATGGTCAAATGAGTTACCTGACTCTGAAATTGGTATAGACCTCATGATCTGA 903 0.4496 MIDAGSTAMATSPLKKIERAHLLYRDGRYGDALGFYTEAIGMAKTKAQKIALHSNRAACYLKLQDFKKAAEECTSVLELDYEHSGALMLRAQTLVTLKEYNSALFDVNRLLEMDPSSEVYQNLQARLRTQLSLAPIPELEEEFEEQGDDEDEVTVKGNNKWEKSQEKNVGRDQKDELDKAAITNAEIDSKVSSEQRREQNSEPKTSTPETIAKAPQEEPAEQHSKAWKSIPKPKGHSALNYARWDSVEDDSSEDDDNDDDEDEEESQPQYRFRVRTVGGSTGLSWSNELPDSEIGIDLMI 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3041 300 SUPERFAMILY TPR-like 17 130 IPR011990 GO:0005515
Acco01g3041 300 SMART tpr_5 84 117 IPR019734 GO:0005515
Acco01g3041 300 SMART tpr_5 50 83 IPR019734 GO:0005515
Acco01g3041 300 SMART tpr_5 13 46 IPR019734 GO:0005515
Acco01g3041 300 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 9 278 - -
Acco01g3041 300 MobiDBLite consensus disorder prediction 152 183 - -
Acco01g3041 300 Pfam Tetratricopeptide repeat 64 127 - -
Acco01g3041 300 Gene3D Tetratricopeptide repeat domain 14 155 IPR011990 GO:0005515
Acco01g3041 300 MobiDBLite consensus disorder prediction 141 300 - -
Acco01g3041 300 MobiDBLite consensus disorder prediction 248 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3041 Acco-ChrAcco01 47934248 47936335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3041 15 131 Calmodulin-binding Proteins AT3G25230 34.884 2.23e-14 71.6