Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3029 ATGGGAAAAGGAAGAGCTCCTTGCTGCGATAAGAACAAAGTGAAGAGAGGACCTTGGAGCCCTCAAGAAGACCTTAAGCTCATTTCCTTCATCCAGAAACATGGTCATCAGAATTGGCGTTCTCTCCCCAAGCAAGCTGGGCTTCTTCGATGTGGAAAGAGCTGTCGTCTGAGATGGATAAACTACTTAAGGCCTGATTTGAAGAGAGGCAGGTTCACAAAAGAAGAAGAAGAGACCATAATGAAGCTGCATGAAACCTTAGGAAACAAGTGGTCAAAAATTGCATCCGAGTTGCCAGGCAGAACAGACAACGAGATCAAGAATGTGTGGCACACCCACTTGAAGAAGAAATTATTATTGAAGAACAGTTTAGATAATTATAACAACCCGTCCACCATTCCTGATCAATCCAATAATAAGCAAGAATCTTCATGCATAACCTCTTCCTCTTCATCTTCTACCTCAACTGGACACCAAGCAGGGACAACATCATCGATTCCTCAGAAGAAAACTACAGACAATATTAATGAGCAAAACTCCGAAAATGTCAATAAAGAGTGTTATACTACAGATCAATCATCATCAGCACCACCTATCTGCAAATTACAAGAGGATCATCATCAGCTGGAACTAGTCGCAGCAGGTTCTTCATTATTGTATCAAGGAGCAGGGCCAGATAATAATAATGATAATAATACACTAGTGGTACTAAATGAGGTTGTTGTTGACAAGCCACCTAATAATAATAACACCGGCAGTGATGGTTTGCTTGAAATACCATTCGAGGCTGACGATGACTTTTGGAACATGTTGGATGATGACAACATAGGAGCTGGAGAAACTGAAACAATGAAGTACTGGATCAGGGAGATTGAGAAGGATCTTGGATTGGAACCTCAGGCATCATCATCATCTCATGATCTAACCATAGGATTGTTTGATGATATGGACATATGGCCTAATAATGGTTGTTCTTCTGATGGTTTGAGTCTATTAATTAAGGATTTTGTTCATAATTGCTAG 1023 0.4037 MGKGRAPCCDKNKVKRGPWSPQEDLKLISFIQKHGHQNWRSLPKQAGLLRCGKSCRLRWINYLRPDLKRGRFTKEEEETIMKLHETLGNKWSKIASELPGRTDNEIKNVWHTHLKKKLLLKNSLDNYNNPSTIPDQSNNKQESSCITSSSSSSTSTGHQAGTTSSIPQKKTTDNINEQNSENVNKECYTTDQSSSAPPICKLQEDHHQLELVAAGSSLLYQGAGPDNNNDNNTLVVLNEVVVDKPPNNNNTGSDGLLEIPFEADDDFWNMLDDDNIGAGETETMKYWIREIEKDLGLEPQASSSSHDLTIGLFDDMDIWPNNGCSSDGLSLLIKDFVHNC 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3029 340 Gene3D - 71 148 - -
Acco01g3029 340 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Acco01g3029 340 CDD SANT 71 113 IPR001005 -
Acco01g3029 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Acco01g3029 340 FunFam Transcription factor RAX3 9 69 - -
Acco01g3029 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Acco01g3029 340 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 199 - -
Acco01g3029 340 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Acco01g3029 340 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Acco01g3029 340 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Acco01g3029 340 Gene3D - 16 68 - -
Acco01g3029 340 CDD SANT 18 63 IPR001005 -
Acco01g3029 340 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Acco01g3029 340 MobiDBLite consensus disorder prediction 129 181 - -
Acco01g3029 340 SMART sant 15 65 IPR001005 -
Acco01g3029 340 SMART sant 68 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3029 Acco-ChrAcco01 47816312 47818815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3029 1 177 MYB Transcription Factor Family AT1G56160 63.784 1.52e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco01g3029 Myb_DNA-binding 4.5e-14 CL0123