Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2966 ATGGGGCATCGCTGCTGCAGCAAACAGAAGATCAAGAGAGGTCTGTGGTCTCCTGAAGAAGATGACAAGCTCGTCAAGTTCATTACCACTCATGGCCACAAAAGTTGGAGTTCTGTTCCTAAACTTGCAGGGTTGCAGAGATGTGGGAAAAGTTGCAGACTGAGATGGATAAACTATTTGAGACCTGACCTCAAGAGAGGTTCCTTCACTGCTGATGAAGAACAAACCATTATTGACGTTCATCGAATTCTCGGAAACAGATGGGCTCAGATAGCGAAGCATCTGCCGGGAAGAACAGACAACGAGGTGAAGAATTTCTGGAACTCATGCATTAAGAAGAAACTCATTTCTCAAGGCTTCGACCCTCAAACTCACAATCTTCTCTCTTCTCATAGACGATCCTCTCTTTCTTCTGCCACCGACAAACATAACAACAATAATGAATCCACTTTCAGACTCATTCATGAACCTGACCATCATATGAATCTTCAACCTTGTACCTCCAACGTGTTCTCCATCCAATACCAACAACCTAATTCAACCACCACCACCACTAATCATAAAGTCCATGATGAACCTCATCATCATAATGTCCCCTTTGAATCATCATCCATTATTATTAATGGGAATAATATTCCTGATTATGCGCCCAAGAACATTAATAATGATTGCTTGTCTTCACTTGCTGGGTTTTCTGGGAATATTGACAACAGATCATCATATGATATTGCTGAAACTGATGACATGTTCATATCATCAGCAGCCCAGACAATAATGGAATCACAAGTTACTACTGAAGCACCGTTAGGACAAGAGAAGGAGAAGAAGAGTGATAATAACATTGAGCAAGTCAGGGTAGAGGAAGACAATAGTAATTGTTTGGAGGGGTCAAGTATTAATAATAACAACTTTGATTATGGATTGTTGGAAGGTGTACTTAACTCTGAATATATGTCTTATGACCTTCTCTCATCCATCGATGACCTTGCATGGAACTTTTAG 1002 0.4062 MGHRCCSKQKIKRGLWSPEEDDKLVKFITTHGHKSWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFTADEEQTIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGFDPQTHNLLSSHRRSSLSSATDKHNNNNESTFRLIHEPDHHMNLQPCTSNVFSIQYQQPNSTTTTTNHKVHDEPHHHNVPFESSSIIINGNNIPDYAPKNINNDCLSSLAGFSGNIDNRSSYDIAETDDMFISSAAQTIMESQVTTEAPLGQEKEKKSDNNIEQVRVEEDNSNCLEGSSINNNNFDYGLLEGVLNSEYMSYDLLSSIDDLAWNF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2966 333 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Acco01g2966 333 Gene3D - 10 66 - -
Acco01g2966 333 CDD SANT 68 108 IPR001005 -
Acco01g2966 333 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Acco01g2966 333 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Acco01g2966 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Acco01g2966 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Acco01g2966 333 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Acco01g2966 333 PANTHER MYB DOMAIN PROTEIN 55 1 288 - -
Acco01g2966 333 FunFam Myb transcription factor 10 66 - -
Acco01g2966 333 SMART sant 65 113 IPR001005 -
Acco01g2966 333 SMART sant 12 62 IPR001005 -
Acco01g2966 333 CDD SANT 16 60 IPR001005 -
Acco01g2966 333 FunFam Transcription factor MYB86 67 143 - -
Acco01g2966 333 Gene3D - 67 149 - -
Acco01g2966 333 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2966 Acco-ChrAcco01 46864848 46867194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2966 1 133 MYB Transcription Factor Family AT3G12720 84.962 1.39e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco01g2966 Myb_DNA-binding 2.9e-14 CL0123