Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2965 ATGGCACCGATGAGTCTCCCACCTGGTTTTAGGTTCCACCCAACAGATGAAGAACTCGTTGCTTACTACTTGGAGAGAAAAATCACAGGCCGTTCTATAGAGCTCGAAATTATCCCTGAAGTTGATCTTTACAAATGCGAACCCTGGGATTTGCCAGAGAAGTCGTTCTTACCAAGTAAGGATATGGAGTGGTACTTCTACAGTCCAAGAGACAGAAAGTATCCAAATGGGTCAAGAACAAACAGAGCAACAATGGCTGGATACTGGAAAGCCACAGGGAAAGATAGGGCCGTTCACTCTCAGAAACGACAAGTAGGAATGAAGAAGACGCTGGTTTATTACAAAGGAAGAGCCCCACATGGCATCAGAACCAACTGGGTCATGCATGAGTATCGTCTTACTCATTCAACACCTCCCACTTCCTCTTGCTTCTTGAAGGATTCTTATTCATTGTGTCGTGTCTTCAAGAAGACGATCCAAATCCCAAAACCAAAAGAAGATCAGGATCAGGAAGAGGAAACAGAAATGACTGCTAATAAGAATAAGGGATCAAAATCTGACACGTGGGTCGCAGAAGAAAAAGGACTAAGAGAAGATTCAAGTGGCTTCGAGGTTTCTAAAGAAATGGAAATGGAAATTGCAGATGAGAAAAGAATGGTCAATAATAATGATGATGATGGTGACAATGTTAATAGTAAATTTCCTTGTGATAATGCTTCATCCTCGGATCTCACTCAAGGGACCCCCATTGACCGAACTGGTGTAAGAGATAATGATTTTCAAGCCCAAATTGCTTCTGATGAAGCAAATAGTGCAGCTAATCCGTATTCCCTTGGAATTGACTACTCGTCAAATCTATTTCAGGAAATGGAGCTACAAATGTATGCTGGAATGTGCTATCTTCCATATCCAGCATTAGAGCTTGAAGATTTCTCTCAAACAAGTTTTGGAGAGACGAAGCCATTAATAAAGCCAGCAGATCAACAAATGGAGATGAATGATTGCTCGATGTATGATCAGAAATACAAGAGCTGTGGTACAATGAGTGGGACCCTAGAAGAGATCATATCCTTGTGTTCTTCTCGTCAAGACAATAACTCTTTGCCTCTCTCTATGTTAGATTGA 1125 0.4142 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELEIIPEVDLYKCEPWDLPEKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATMAGYWKATGKDRAVHSQKRQVGMKKTLVYYKGRAPHGIRTNWVMHEYRLTHSTPPTSSCFLKDSYSLCRVFKKTIQIPKPKEDQDQEEETEMTANKNKGSKSDTWVAEEKGLREDSSGFEVSKEMEMEIADEKRMVNNNDDDGDNVNSKFPCDNASSSDLTQGTPIDRTGVRDNDFQAQIASDEANSAANPYSLGIDYSSNLFQEMELQMYAGMCYLPYPALELEDFSQTSFGETKPLIKPADQQMEMNDCSMYDQKYKSCGTMSGTLEEIISLCSSRQDNNSLPLSMLD 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2965 374 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Acco01g2965 374 MobiDBLite consensus disorder prediction 225 252 - -
Acco01g2965 374 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Acco01g2965 374 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Acco01g2965 374 MobiDBLite consensus disorder prediction 163 204 - -
Acco01g2965 374 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Acco01g2965 374 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 226 - -
Acco01g2965 374 MobiDBLite consensus disorder prediction 220 253 - -
Acco01g2965 374 FunFam Nac domain-containing protein 86 15 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2965 Acco-ChrAcco01 46855936 46859822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2965 1 357 NAC Transcription Factor Family AT1G54330 50.556 4.75e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco01g2965 NAM 1e-39 No_clan