Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2952 ATGGCAGCCACTACTACTACAACCGCCGCGGCGCCGCGCCAATTATCCCAGAAAGAGGCTGACATTCAGATGATGTTGGCCGCGGAGGTTCACCTTGGCACAAAAAATTGTAACTTTCAAATGGAGCGGTATGTCTTCAAGCGCCGCAACGATGGTATTTACATAATCAACCTTGGGAAGACTTGGGAAAAGCTCCAGCTTGCTGCTAGGGTTATTGTTGCCATTGAGAACTCTAAGGACATTATTGTTCAGTCTGCCAGGCCTTATGGTCAGAGAGCAGTTCTCAAGTTTGCTCAATACACGGGTGCTCATGCTCTTGCTGGAAGGCATACTCCTGGAACATTCACTAACCAGCTCCAGACATCCTTCAGTGAGCCTCGCCTTCTCATTCTGACTGATCCAAGAACAGATCATCAGCCCATTAAGGAAGCTGCACTTGGAAATATACCGACTATTGCTTTCTGTGACACTGACTCTCCCATGAGATATGTGGACATCGGTATTCCTGCTAACAATAAGGGAAAGCACAGCATAGGTTGCCTCTTTTGGCTATTGGCAAGGATGGTTCTGCAGATGAGGGGCACTATTCGTCCAGGGCTCAAGTGGGAAGTGATGGTGGATTTGTTCTTCTATAGAGAACCTGAGGAAACCAAGCAACAAGAAGAAGATGAAGCGCCTGTTGCTCCAGACTATGCTATTACAGACTTCAATACTTCCGGCATTGCTACTGATGACCAGTGGCCTGCTGCCATAGATCAGACGTGGACAACTGAGGCAGTCCCACAGCCGCCTATTGCTGCAGCTCCTGCTGTCAATTGGGCTGCAGATGCTGCTGGAGGATGGGTTGAGCCTGTGGCACCTCCCCAAGCCCAGGCACCTCCCCAAGCCCAAGCTCCAGTCCAACAAATTCCTACCCCCGGAACTGAGGATGTAACTGCCACCGGCTGGGAGTAA 954 0.5031 MAATTTTTAAAPRQLSQKEADIQMMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENSKDIIVQSARPYGQRAVLKFAQYTGAHALAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWEVMVDLFFYREPEETKQQEEDEAPVAPDYAITDFNTSGIATDDQWPAAIDQTWTTEAVPQPPIAAAPAVNWAADAAGGWVEPVAPPQAQAPPQAQAPVQQIPTPGTEDVTATGWE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2952 317 MobiDBLite consensus disorder prediction 283 317 - -
Acco01g2952 317 ProSitePatterns Ribosomal protein S2 signature 1. 22 33 IPR018130 GO:0003735|GO:0005840|GO:0006412
Acco01g2952 317 PANTHER 40S RIBOSOMAL PROTEIN SA 11 295 IPR005707 GO:0003735|GO:0006412|GO:0015935
Acco01g2952 317 Pfam Ribosomal protein S2 124 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Acco01g2952 317 Pfam Ribosomal protein S2 25 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Acco01g2952 317 FunFam 40S ribosomal protein SA 21 227 - -
Acco01g2952 317 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Acco01g2952 317 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Acco01g2952 317 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Acco01g2952 317 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Acco01g2952 317 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Acco01g2952 317 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Acco01g2952 317 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Acco01g2952 317 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Acco01g2952 317 Hamap 40S ribosomal protein SA [rps-0]. 9 250 IPR027498 GO:0003735|GO:0006412|GO:0015935
Acco01g2952 317 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Acco01g2952 317 Gene3D - 21 226 - -
Acco01g2952 317 MobiDBLite consensus disorder prediction 295 309 - -
Acco01g2952 317 NCBIfam 30S ribosomal protein S2 17 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2952 Acco-ChrAcco01 46690400 46692999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2952 1 281 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 75.265 2.12e-153 429