Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2928 ATGGCAATGCCGTTGGCCGTTGACGGGACTGCAGCATTTGGAAGGCGCAGGAGGAGTGGCCGTGCATGCTTTCCGATTCTGCGAAGAAGGTCGATTACTCCTCGCCGATTCTGCATAAACATCTTATGCTTCTTTATGAAGAAGGAAGAGATCATGGGAAGAGGGAAGATAGAAATAAAGAGGATAGAGAACACAACGAATCGCCAAGTGACATTCTGCAAGAGAAGGAATGGTCTTCTCAAGAAGGCCTATGAGCTTTCTGTACTCTGCGACGCAGAAGTTTCCCTAATTGTTTTCTCCAGCAGAGGCCGCCTCTACGAATATTCAAACAACAACATAAGGTCAACTATAGAGAGGTACAAGAAGGCATGTTCAGATAATTCAGGTGCAAGCTCTATTACTGAGATCAATGCTCAGTATTATCAGCAAGAATCGGCGAAGCTGCGTCAGCAAATTCAGATGCTTCAAAATTCAAACAGGCACTTGATGGGTGATGCGTTGAGCACACTCACAGTGAAGGAACTGAAGCAGCTGGAAAATAGACTCGAAAGGGGAATCTCTCGTATCAGGTCTAAGAAGCATGAGATGCTGCTGGCAGAAATCGAATACAGGCAAAAAAGGGAGATTGAGCTGGAGAATGAAAATCTCTGCCTTCGGACAAAGCTAGGAGAAATGGAGAGGGTGGAGCAGGAAGCAAACATGGTGTCAGCAGGAGAGGAACAGCAGCTGAGTGCGATGCAGCAAGCTTTGGCTTCTCGCAATTTCTTCAATCCAACAACCATCATGGACCTTTCTGCAACTCCCTACCCTCACTCTGACAAGAAGTTGCTTCATCTCGGGTGA 843 0.4662 MAMPLAVDGTAAFGRRRRSGRACFPILRRRSITPRRFCINILCFFMKKEEIMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNNIRSTIERYKKACSDNSGASSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGISRIRSKKHEMLLAEIEYRQKREIELENENLCLRTKLGEMERVEQEANMVSAGEEQQLSAMQQALASRNFFNPTTIMDLSATPYPHSDKKLLHLG 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2928 280 FunFam agamous-like MADS-box protein AGL11 64 147 - -
Acco01g2928 280 CDD MADS_MEF2_like 53 126 IPR033896 GO:0000977|GO:0045944
Acco01g2928 280 Gene3D - 65 127 IPR036879 GO:0003677|GO:0046983
Acco01g2928 280 PANTHER SERUM RESPONSE FACTOR HOMOLOG 52 229 - -
Acco01g2928 280 ProSiteProfiles MADS-box domain profile. 52 112 IPR002100 GO:0003677|GO:0046983
Acco01g2928 280 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 61 108 IPR002100 GO:0003677|GO:0046983
Acco01g2928 280 ProSiteProfiles K-box domain profile. 138 228 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco01g2928 280 Coils Coil 172 195 - -
Acco01g2928 280 ProSitePatterns MADS-box domain signature. 54 108 IPR002100 GO:0003677|GO:0046983
Acco01g2928 280 PRINTS MADS domain signature 74 89 IPR002100 GO:0003677|GO:0046983
Acco01g2928 280 PRINTS MADS domain signature 89 110 IPR002100 GO:0003677|GO:0046983
Acco01g2928 280 PRINTS MADS domain signature 54 74 IPR002100 GO:0003677|GO:0046983
Acco01g2928 280 Pfam K-box region 137 222 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco01g2928 280 SUPERFAMILY SRF-like 53 125 IPR036879 GO:0003677|GO:0046983
Acco01g2928 280 Coils Coil 138 158 - -
Acco01g2928 280 SMART madsneu2 52 111 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2928 Acco-ChrAcco01 46480767 46491173 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2928 51 280 MADS-box Gene Family AT4G09960 70.638 8.46e-113 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco01g2928 K-box 1.5e-25 No_clan