Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2924 ATGGCCCAGCAGTCATCTAGACTTCAGCGCTTGCTTACTCTCTTGGACACTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGCCAAATCGGGGACATTGCAAAATCTCATCCTCAAGACTTGATCAGTCTGCTAAAGAAAGTATCTCAATATCTACATAGTAAAACTTGGGATACAAGAGTTGCAGCTGCCCATGCAATTGGGGCTATTGCTGAGAATGCGAAGCACACAAGTTTGAATGAACTTATTGCTGCTGTTGCAACAAAATTGTCTGAAGCTGGGATATCTAGTAGTGTTGAAGATATATGTGCGTGGTCTTACTTACAATCTAGAATTACAGGAAGTGCATTTAGGAGGTTGGACAATGCTCACTATCTCTTTGACCTCAACAAGGTTCTTGAATATGGCTCGTTATTAGCGTCTGGAGGACAGGAGTTTGATATAGGAAGTGATAATGTAAAGAACCCAAAGGAGCGATTGGCTCGCCAGAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTGTGCGAACAATTCATGGATATCAGTGATGTGATAAGAGATGAAGATCTTATGGCATATAAATCAGATATACATCCATATGGAATCGATCATAGAGTTTTTACATCTCATTCTGTACATAACATCCAGAAAATGGTTGCCAATATGGTTCCTAGTGTTAAATCTAAGTGGCCAAGTGCAAGAGAACGAAATCTCTTGAAACGTAAAGCAAAAATGAACTCAAAAGACCAAACAAAAGGCTGGTGTGAGGATGGAAGTGCAGAGGCATCACTTGCTCAAAATGCAACTTCTAGAGGCACATATCCTGATTCAGTAAATTGCAATAAGGCTTTCATTTACGGTAATCATGACAAAGATGGATTTGATCATGATGGAGATGGACGATGGCCTTTCCATATTTTTGTTGAGCAGCTTATTATTGATATGTTTGATCCTGTTTGGGAGGTACGCCATGGCAGTGTGATGGCTTTGAGGGAGATTTTAGCACATCAAGGTGCATCTGCTGGCGTATTAAAACCGGACTCACACTTGGGTGGAGAACTAGTTCTTGAATTGGAGGATAGAAGTGATTCAAATGTACTAAAGAGAGACAGGGAGATAGATTTGAATATGCAAATTTCAGGGGATGAGTTTGAGTCAAACTTTAAGAGGCCTAAGCTTGAAGATGTATCATCCACTTCCATGGATGGGAGGACTATATGCAGCAATGGGGGTGATATTGAAATCAGCATTGGTACTGAAACTCTTGGATGCGGTTTACCCATGGATCACAGAAATGGACAAGTTGATGATTGTTCTGTGGGCTTGGATCTCAAATCTTATTCTGAGGTTTTATGTCATTCATGCGAGGAACCAGCTAATATAGCTGAGCAGAAGGATTATTCTGGTGAGGATAAGATTCCATCTGGCAATCTTAATGGGCTTCCTCAGAATTGTGAGCTTGTGAACTTGCTTAATGTGACTAAAAGTTCGTGGCTTCAAAACTATGGATTTCTTCAAGATTGTGTAATACGCTTCTTGTGTGTGTTGTCACTAGATCGCTTTGGTGATTACGTCTCTGATCAGGTTGTTGCTCCTGTACGGGAGACCTGTGCACAAGCGTTAGGTGCTGCATTCAAGTACATGCATCCAGCATTAGTAAATGAAACATTAAATATATTGTTGAAAATGCAGTGTAGAGCAGAATGGGAGATTCGTCATGGCAGCCTTTTAGGGATAAAATATTTAGTTGCTGTGCGGCAGGAAATGCTTTCAGAATTGCTTGGGCGTGTTCTTCCTGCATGCAAATTTGGGTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCAGCTGCAGCCGCAATTGTTGCTTTGCCGGGTCAAACTTTGCACTCGATTGTGATGCTATTGTGGGACATTCTGCTTGATTTGGATGACTTAAGCCCATCCACTAGCAGTGTAATGAATCTTCTGGCAGAAATTTATTCTCAGGATGAGATGGTTCCAAAGATGAACCATGCAATTGATTTGGGGGATACAGAAATGGTGAATCTAATTGGAGTTGGTGGCAGCGGTAATAGTGATCATGACAAAAATCCTTATATGCTTTCGATGTTGGCACCACGCTTATGGCCTTTTATGAGGCATAGCATCACCTCTGTTCGGTTTTCAGCAATTCGCACTTTGGAGCGGCTGCTTGAAGCTGGATACAAAAGAAGCATGTCTGATCAATGCTGTTCTTCATTTTGGCCTTCTTTTATCCTAGGAGATACCCTTCGAATTGTATTTCAGAATCTGCTACTGGAATCAAATGAGGCTATATTGCAGTGTTCTGAGAGAGTTTGGAGGCTTCTTGTTCAGTGTCCTGTGGAGGATTTGGAGATGGCTGCTAGATCTTATATGAATTCCTGGATAGAACTTGCATCTACCCCATTTGGTTCAGCATTAGACACCTCAAAGATGTTTTGGCCTGTTCCCTTCCCGCAAAAAAGTCAATTGAGAGCAGCAGCTAAAATGAGAGCTGTGAAGCTTGAAAATGAATATGGTGGAGATCTTGGCTCAGATTCTACTAAAGGAATAAATCTACAAGAAAGAAATGGAGATGTTTCCATGGGTTCTGTCAAGATTGTTGTTGGTGCGGATGTTGATACATCAGTAACTAATACTAGAGTGATAACTGCTACTGCATTGGGAAGTTTCGCTTCTAAGCTGCCAGAGGTTTCTATTAAATATGTGATTGACCCGCTGTGGAATGCTCTGATCTCTTTGTCTGGTGTCCAGCGCCAGGTTGCATCCATGGTATTTATTTCTTGGTTCAAGGACATTAAACGAAGTCAAATATCTGAAAACCCTAAGATTATTCCTGTTGTCCCTAATTTTGTCAAAGACTGGCTGCTGGACTTATTGGCATGTTCTGATTCAGCATTCCCGACCAAGGATTCATGTCTTCCTTATGCTGAGCTTTCAAGAACATATTCAAAGATGCGTAATGAGGCTGGTCAATTGCTTAATGCTATGAAGTGTTCTGGTATTTTTGATGACTTATTATCAACTATGAAAGTTGAGTTGGAGAGCATGAGTGTGGATGATGCCATTAATTTTGCTTCAAAGGTTCCAGCTTTGTCTGGTGAAAGTTCTGGGAATGAGTTCTCAGGAAAAAACATTATGGATGATATTGAGTCATCAAAACAGAGACTCTTGACAACTTCTGGCTATTTAAAATGTGTCCAGAGCAATTTGCATATTACGGTTACATCTGCTGTTGCGGCTGCAGTTGTTTGGATTTCAGAATTTCCTTCACGCCTCACCCCAATTATTTTGCCGTTGATGGCTTCAATAAAACGAGAGCAGGAGGAAATACTGCAAATGAAGTCAGCTGAGGCACTGGCTGAGCTTATGTATCACTCTGTTGAACGTAGACCTTGTCCAAATGATAAACTAATTAAGAATATTTGTGGCTTGACTTGTATGGATCCCTCTGAGACACCTCAAGCTGAATCTATTAGATCCATGGACAGTATTGACGACCAAGGTCTCATGTCCTTTGGAACTCCCGGGGGTAAACAGAGATCAAAGGCCAGCGTTCTGGCTGAAGACCGATCAAAGTTTGAAGGCTTTATCAGTAGACGTGGATCTGAACTCTCACTAAGGTTTCTATGTGAGAAGTTTGGTGTTTCATTGTTTGATAAGCTTCCTAAGCTGTGGGATTGCCTTACTGAGGTGCTTAAGCCTAGCTCTGCAGAATCTTCTCTTGCTGCTTCTGAGAAAGAAATCACTTTGGTTATAGAGTCTGTCAGCAATCCCCAGACCTTGATTAACAATATTCAGGTGGTACGCTCTATTTCTCCCCTCCTGCATGAGGACTTGAAGCCAAAATTATTTACACTTCTCCCTTGCATTTTCAAATGTGTTAAGCATCCTCATGTTGCTGTTAGATTAGCTGCTTCACGCTGCATTACTTCAATGGCCAGGTCAATGACTTTAAAAGTTATGGGTGCTGTGGTTGAAAATGCTGTCCCTATGTTAGCAGATGCTTCATCAGTTCATGCTCGGCAAGGAGCTGGCATGCTGATTAGTTTTCTTGTTCAGGGGCTTGGAGTTGAGCTGGTCCCGTATGCTCCTCTCTTGGTAGTTCCACTTCTTCGGTGTATGAGTGATTGTGATCAGTCCGTCAGACAGAGTGTTACACATAGTTTTGCCACTCTTGTACCTTTACTTCCTTTAGCACGGGGCCTTCCTCCACCTCGTGGTTTAGAGGAGGGTTTATCTGGAAATACAGAAGATGTAAAATTTCTGGAGCAACTACTTGACAATTCTCATATTGAAGATTATCAGTTGTGCACTGAATTGAAAGTATCATTGAGAAGGTATCAACAGGAAGGTATAAATTGGTTGGCTTTCTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAAACTCTTCAAGCATCAGCAATTGTGGCATCTGAAATAGCTGAGCGTCAAAGTCTGAATTATCATGAGGAACTTCTTCCGTCTTTAATCATTTGCCCATCAACTCTTGTTGCTCATTGGGCTTTTGAGATAGAGAAATATATTGATGTTTCTCTTGTATCTACTCTTCAATATGTTGGTTCTGCTCCAGAGCGGATGTCTATTAGAGAAAATTTTTGTAAGCATAATGTCATCATAACATCATATGATGTTGTCCGTAAAGATATTGATTATTTAGTTCAGCTGCAATGGAATTACTGCATTTTAGATGAAGGACATATAATCAAGAATGCCAAGTCCAAAGTAACTCTAGCTGTAAAGCAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGAACACCAATACAGAATAACATCATGGACTTGTGGTCCCTTTTTGATTTTCTAATGCCAGGATTTCTTGGTACAGAAAGACAGTTCCATGCCACCTATGGGAAACCACTCCTAGCTGCAAGAGATCCCAAGTGCTCTGCTAGGGATGCTGAAGCTGGAATTCTTGCTATGGAGGCATTGCATAAGCAGGTCATGCCTTTCCTTCTCCGTAGAACTAAGGAAGAAGTCTTGTCTGATCTGCCAGAAAAAATAATTCAAGACAGATACTGTGATTTAAGTCCTGTACAGCTTAAACTCTATGAACAATTTTCTGGTTCTCGTGTCAAAGAAGAAATCTCATCTGTAGTAGCAATGAATGAATCAGCTGTGACAGAAGGAAGCAGCAGATCACCCAAAGCATCTTCACACGTCTTCCAGGCACTCCAATACTTGCTAAAGTTGTGCAGTCATCCTTTGCTTGTTGTTGGTGAGAAGATTCCTGATCAACTCTCTACCGTTCTCTTGGAATTGTTGCCTGCTGGCTCTGAAATCATTTCAGAACTTCACAAACTACATCATTCCCCAAAATTGGTGGCTCTCCAGGAGATATTGGAAGAATGTGGAATAGGAGTTGATTCTTCAGGTTCTGAGAGTTCTGTTAGCATTGGTCAGCACAGGGTTTTGATATTTGCTCAACATAAGGCTTTTCTGGATATTATTGAAAGAGACTTATTCCAGACATGTATGAAGAATGTCACATATTTGCGACTGGATGGATCTGTTGAGCTGGAGAAGCGTTTTGAAATTGTCAAAACATTCAATTCAGACCCTACCATTGATGTATTGTTGCTTACAACGCATGTGGGTGGGCTTGGTTTGAACCTGACATCCGCTGATACTCTTGTTTTTGTGGAGCATGATTGGAATCCAATGCGAGATCATCAGGCAATGGACAGAGCACACCGTTTAGGGCAGAAAAAAGTTGTCAATGTCCACCGTCTAATAATGCGTGCTACTTTAGAAGAGAAAGTTATGAGTCTACAAAGGTTCAAAGTTTCAGTGGCTAATGCTGTCATTAATGCTGAAAATGCCAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTGTTCACATCAGCAGAAACCTTGAAGAAGGGAGCTTCTGCTGCGAACCGATCAGATAACACCGATGGAGATACTAAATCCGTGGGCGGTGGGAAGGGGTTGAAAGCAATACTAGGAGGTTTGGACGAACTTTGGGACCATTCACAGTATACAGAAGAGTACGATCTAACTCAATTTTTGTCAAAGCTCAATAGCTGA 6171 0.4144 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDIAKSHPQDLISLLKKVSQYLHSKTWDTRVAAAHAIGAIAENAKHTSLNELIAAVATKLSEAGISSSVEDICAWSYLQSRITGSAFRRLDNAHYLFDLNKVLEYGSLLASGGQEFDIGSDNVKNPKERLARQKQNLRRRLGLDVCEQFMDISDVIRDEDLMAYKSDIHPYGIDHRVFTSHSVHNIQKMVANMVPSVKSKWPSARERNLLKRKAKMNSKDQTKGWCEDGSAEASLAQNATSRGTYPDSVNCNKAFIYGNHDKDGFDHDGDGRWPFHIFVEQLIIDMFDPVWEVRHGSVMALREILAHQGASAGVLKPDSHLGGELVLELEDRSDSNVLKRDREIDLNMQISGDEFESNFKRPKLEDVSSTSMDGRTICSNGGDIEISIGTETLGCGLPMDHRNGQVDDCSVGLDLKSYSEVLCHSCEEPANIAEQKDYSGEDKIPSGNLNGLPQNCELVNLLNVTKSSWLQNYGFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLKMQCRAEWEIRHGSLLGIKYLVAVRQEMLSELLGRVLPACKFGLEDPDDDVRAVAADALIPAAAAIVALPGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQDEMVPKMNHAIDLGDTEMVNLIGVGGSGNSDHDKNPYMLSMLAPRLWPFMRHSITSVRFSAIRTLERLLEAGYKRSMSDQCCSSFWPSFILGDTLRIVFQNLLLESNEAILQCSERVWRLLVQCPVEDLEMAARSYMNSWIELASTPFGSALDTSKMFWPVPFPQKSQLRAAAKMRAVKLENEYGGDLGSDSTKGINLQERNGDVSMGSVKIVVGADVDTSVTNTRVITATALGSFASKLPEVSIKYVIDPLWNALISLSGVQRQVASMVFISWFKDIKRSQISENPKIIPVVPNFVKDWLLDLLACSDSAFPTKDSCLPYAELSRTYSKMRNEAGQLLNAMKCSGIFDDLLSTMKVELESMSVDDAINFASKVPALSGESSGNEFSGKNIMDDIESSKQRLLTTSGYLKCVQSNLHITVTSAVAAAVVWISEFPSRLTPIILPLMASIKREQEEILQMKSAEALAELMYHSVERRPCPNDKLIKNICGLTCMDPSETPQAESIRSMDSIDDQGLMSFGTPGGKQRSKASVLAEDRSKFEGFISRRGSELSLRFLCEKFGVSLFDKLPKLWDCLTEVLKPSSAESSLAASEKEITLVIESVSNPQTLINNIQVVRSISPLLHEDLKPKLFTLLPCIFKCVKHPHVAVRLAASRCITSMARSMTLKVMGAVVENAVPMLADASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFATLVPLLPLARGLPPPRGLEEGLSGNTEDVKFLEQLLDNSHIEDYQLCTELKVSLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASEIAERQSLNYHEELLPSLIICPSTLVAHWAFEIEKYIDVSLVSTLQYVGSAPERMSIRENFCKHNVIITSYDVVRKDIDYLVQLQWNYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFHATYGKPLLAARDPKCSARDAEAGILAMEALHKQVMPFLLRRTKEEVLSDLPEKIIQDRYCDLSPVQLKLYEQFSGSRVKEEISSVVAMNESAVTEGSSRSPKASSHVFQALQYLLKLCSHPLLVVGEKIPDQLSTVLLELLPAGSEIISELHKLHHSPKLVALQEILEECGIGVDSSGSESSVSIGQHRVLIFAQHKAFLDIIERDLFQTCMKNVTYLRLDGSVELEKRFEIVKTFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRATLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFTSAETLKKGASAANRSDNTDGDTKSVGGGKGLKAILGGLDELWDHSQYTEEYDLTQFLSKLNS 2056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2924 2056 SUPERFAMILY ARM repeat 6 1498 IPR016024 -
Acco01g2924 2056 Gene3D - 512 751 IPR011989 -
Acco01g2924 2056 FunFam B-TFIID TATA-box-binding protein-associated factor 1 1431 1692 - -
Acco01g2924 2056 SMART helicmild6 1853 1939 IPR001650 -
Acco01g2924 2056 Pfam SNF2-related domain 1479 1775 IPR000330 GO:0005524|GO:0140658
Acco01g2924 2056 Gene3D - 1433 1692 IPR038718 -
Acco01g2924 2056 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1473 1643 IPR014001 -
Acco01g2924 2056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1694 1995 IPR027417 -
Acco01g2924 2056 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1435 1693 IPR027417 -
Acco01g2924 2056 Pfam Helicase conserved C-terminal domain 1839 1939 IPR001650 -
Acco01g2924 2056 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1830 1985 IPR001650 -
Acco01g2924 2056 SMART ultradead3 1457 1654 IPR014001 -
Acco01g2924 2056 FunFam TATA-binding protein-associated factor 172 1703 2020 - -
Acco01g2924 2056 Pfam Domain of unknown function (DUF3535) 788 1244 IPR022707 -
Acco01g2924 2056 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 4 2055 IPR044972 GO:0003677|GO:0016887|GO:0017025
Acco01g2924 2056 CDD SF2_C_SNF 1808 1950 - -
Acco01g2924 2056 FunFam TATA-binding protein-associated factor BTAF1 1208 1419 - -
Acco01g2924 2056 Gene3D - 4 98 IPR011989 -
Acco01g2924 2056 Gene3D - 1106 1418 IPR011989 -
Acco01g2924 2056 FunFam TATA-binding protein-associated factor BTAF1 1 96 - -
Acco01g2924 2056 CDD DEXHc_Mot1 1461 1693 IPR044078 GO:0005524
Acco01g2924 2056 Gene3D - 1703 2019 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2924 Acco-ChrAcco01 46422767 46442593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2924 1433 1993 RAD5 or RAD16-like Gene Family AT1G02670 26.789 3.30e-44 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco01g2924 DUF3535 2.5e-98 No_clan