Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2920 ATGGTGAGAGGGAAGGTTCAGATGAAGAGGATAGAGAACCCAGTGCACAGGCAAGTGACCTTTTGCAAGCGCCGAGCTGGTCTCCTCAAGAAGGCTAAGGAGCTTTCTGTGCTTTGCGATGCTGAAATTGGCATCCTCATTTTCTCCGCCCACGGCAAGCTCTACGAATTAGCCACCCCTGGAACAATGCAAGGGCTGCTGGAGAGGTACACCAAGTTCACTCGTGGAGCTCAGCTTCAACCTGAACCGCCCATCAATGAATCCTCACATCCTCAGGATGCGAAAGAGGAGATTCATGTGCTGAAACAAGAAATTGGAACTCTGCAAAAGGGTCTCAGTTACTTGTTTGGAGGGGGGGTCGGAACAATGACGGTGGAAGAATTACAAGTGTTGGAGAAGTACCTAGAAATGTGGATTTATCAGATTCGTTCTGTGAAGATGAATAACATGTTAAGCGACATTCAAACTTTGAAGGACAAGGAGGGAATACTCAAAGCTGCAAATAAGTATCTCCAGGATAAGATTGAAGAGAATACTGGAATTACTAACTTTGGACATGTTGCTCTTGAGACTACTAACCCTTGGATAATAGAAGATAACATATTTCAGTTTTAG 615 0.4488 MVRGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGILIFSAHGKLYELATPGTMQGLLERYTKFTRGAQLQPEPPINESSHPQDAKEEIHVLKQEIGTLQKGLSYLFGGGVGTMTVEELQVLEKYLEMWIYQIRSVKMNNMLSDIQTLKDKEGILKAANKYLQDKIEENTGITNFGHVALETTNPWIIEDNIFQF 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2920 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco01g2920 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco01g2920 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco01g2920 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco01g2920 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco01g2920 204 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Acco01g2920 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
Acco01g2920 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Acco01g2920 204 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco01g2920 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco01g2920 204 Pfam K-box region 87 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco01g2920 204 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Acco01g2920 204 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2920 Acco-ChrAcco01 46369654 46373390 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2920 1 204 MADS-box Gene Family AT1G71692 58.525 2.31e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco01g2920 K-box 2.7e-20 No_clan