Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2909 ATGGAGCTTGATTTGAACGCGGAGCCCTTGGACCAAACCCCTACCTCAGTGATTGGATTTGATTCTATATTGGATGAGCTAGAATCAACGCATGAACATATAGAAGAGCGCATTAGGCAACTTGAAGCAGTAACCTTGAGATCTAGGCAGCGTCAGAGGTGGCGACGGGGTCATGATTCAGTTCAAATAAATAATGTCATCGCAGGTATGATGACACCAAATGCTCATGATGAGCACAGGATGCCCCAGGAAGATGTTGGTGTTGCGGTCCAGGAAGGAACAGTTGTCTTAGCGGAGTTGACAACAACTACTGCTCAAAATGGAGGTAGCTTGCCTAGGGAAGAGGCTGGTGCAGACCAAGAAAGAACAGTCAACAATAGGAAAACGGTCAAAAGGAACAGTTCCCATTTAGTAGCTAAAGCATTAGGCATGGATCCATATATAGATGAGGCAGTGAGCACCACTGGGAATTTTTTTGATTGTAACATCTGTCTGGACATGGCAAAGGATCCGATTTTGACATGCTGTGGTCACTTATTCTGTTGGCCTTGCCTTTATCAGGTGTCATATGCTTATTCAAATGTAAGGGAGTGCCCTGTTTGTAAGGGAGAAGTCGTTGAAACAGGCATTATTCCAATTTATGGAAATAAAGATGACTCTAGCAACCGTCAGTTGGAACTGAAAGAAAGTGGTTTTACTATCCCTCCTCGGCCCCAAGCACATAGAATTGACAGTCTCAGACAACAGCTCATTAGCAGGGGAGCATCTACTTCTACAATCCAGGAGATCAGGCGATTTATTGGTTCAGCTGCTACTGATAGAACTCGATTTTCAGTCAATCAACCTCGTCATACCCAGCCCCAAGCATTACATGGCATGGAGACTGAAGTCAGGCAGAATAATCGTTCACGTCTACTTTCAAGGTTGTTAGTTGAAGGTGCTGCTTCATTTTCATCCCTTTCATCAGCATTAAATTCTGCAGTGGATTCTGCTGAAAGATTAGTTGGAGACCTTGAAGCATATATTCATCCTCAACAACCTCAACACATAGGAAGCTCTAGAGATATGCTACATCCTCTTCCTCGTAATAGTGATTCACCTTCTAGCATTGCTGCTACAAACCAATCAGGGAGACGTATTCCAGATGTAATTGCAAGTGATTCTGCAGCCAATGCTTATGTTTCTCCCTTACATATGAACAATGACGCAACTGCTGTAATAGATTCAAGTATCCAGACAGCAGATAACAGTGTACAAATTAGTTCAATAGAGCCTTCTTCATCTTCTAGCAGAACTGTTGCGATAGGACTTCCAGACCTTTACAATAGAGTTCCAAATGGGCGCAGGAGGAGAAGGCTAAGAAGATGA 1368 0.4342 MELDLNAEPLDQTPTSVIGFDSILDELESTHEHIEERIRQLEAVTLRSRQRQRWRRGHDSVQINNVIAGMMTPNAHDEHRMPQEDVGVAVQEGTVVLAELTTTTAQNGGSLPREEAGADQERTVNNRKTVKRNSSHLVAKALGMDPYIDEAVSTTGNFFDCNICLDMAKDPILTCCGHLFCWPCLYQVSYAYSNVRECPVCKGEVVETGIIPIYGNKDDSSNRQLELKESGFTIPPRPQAHRIDSLRQQLISRGASTSTIQEIRRFIGSAATDRTRFSVNQPRHTQPQALHGMETEVRQNNRSRLLSRLLVEGAASFSSLSSALNSAVDSAERLVGDLEAYIHPQQPQHIGSSRDMLHPLPRNSDSPSSIAATNQSGRRIPDVIASDSAANAYVSPLHMNNDATAVIDSSIQTADNSVQISSIEPSSSSSRTVAIGLPDLYNRVPNGRRRRRLRR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2909 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 257 IPR013083 -
Acco01g2909 455 Pfam zinc-RING finger domain 161 202 IPR001841 -
Acco01g2909 455 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Acco01g2909 455 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 121 300 IPR045103 GO:0005783|GO:0006511|GO:0061630
Acco01g2909 455 SUPERFAMILY RING/U-box 154 210 - -
Acco01g2909 455 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Acco01g2909 455 MobiDBLite consensus disorder prediction 346 376 - -
Acco01g2909 455 MobiDBLite consensus disorder prediction 362 376 - -
Acco01g2909 455 Coils Coil 24 44 - -
Acco01g2909 455 SMART ring_2 161 201 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2909 Acco-ChrAcco01 46289807 46291174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2909 115 267 C3H Transcription Factor Family AT3G58030 43.506 9.61e-35 132