Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2907 ATGGAGCTTGGTTTGAGCTTGGGAGATCATGCTTCAAAGCCTTCTGAAACTTCCAGCCTTCTGGGATTAGGCTTCACCACTTTATCCATTGGTTCTTTCAGTACCAAAGCATCAGATCAACAAGAACAAGAACCAGAGGAAAAAGAAGCAGAAAAGCAAAAGGGAAAGCAGAGTATTGAAGAAAACGAAGATAGGCTTGAATATGTTCAGCTCGATCTTCTCCCTCACACCCCAGTCGCTGTTTCTCGCGCTAACCCTCCTTCTCAAATCCCATTTCCATGGCCTCCGTCTGAAAGTGGCAGTTCTCCTAGGGGTGTGGATATGAATAGATTGCCACCGCCGGCGGCGGCGGCGGCGGCGGAGGAAGATGAGGCGGCGATGTCATCGTCTCCAAACAGCGCTGCGTCGTCGTTTCAGATGGATCTCAGTGTCTTTAACAGAGGAGGGAGTAGTCTTAGTGGCTGTAAGAGGGATTATGAAGGAGAGGTATATTATGATCAAAGGGCTGGTTCTTCAAGAGCAAGCGATGAAGATGACAACGTTGGTAGTACGAGGAAGAAGCTAAGGCTGTCCAAGGAACAATCAGCTTTTCTCGAAGAGAGCTTCAAAGAACACTGCACCCTTAACCCAAAACAGAAACTTGCTCTCGCAAAACAGCTCAATCTTCGCCCTCGCCAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACGAAGTTGAAGCAGACAGAGGTAGACTGTGAATACTTAAAGAGGTGTTGTGAGACATTAACGGAAGAGAATAGAAGGCTTCACAAAGAGCTTCAAGAATTGAGGGCTTTGAAGACTAATTCAAACCCATTCTTCATGCAATTACCAGCCACCACCTTGACCATGTGTCCCTCTTGTGAGCGAGTCGCCACCAACAATTCCACCACCACCGCCGCCACTACCCTAGCCTCCGCCGCCGCCACTACGGTTGCTCCAGCTTCCTCTGCAAGTCCTTCTGCGACCAAAGCCACTGAAACAAGAGCCGCCATTGAATCCAAAGCCATTGGATTCCCTCTAAGCAAACCAAAGTTTTATCCTTTTGCCCACACCAAACCCCACCACCACCACCCATCCACGCCCTCTTGA 1116 0.4901 MELGLSLGDHASKPSETSSLLGLGFTTLSIGSFSTKASDQQEQEPEEKEAEKQKGKQSIEENEDRLEYVQLDLLPHTPVAVSRANPPSQIPFPWPPSESGSSPRGVDMNRLPPPAAAAAAEEDEAAMSSSPNSAASSFQMDLSVFNRGGSSLSGCKRDYEGEVYYDQRAGSSRASDEDDNVGSTRKKLRLSKEQSAFLEESFKEHCTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTNSNPFFMQLPATTLTMCPSCERVATNNSTTTAATTLASAAATTVAPASSASPSATKATETRAAIESKAIGFPLSKPKFYPFAHTKPHHHHPSTPS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2907 371 Pfam Homeodomain 185 239 IPR001356 GO:0003677
Acco01g2907 371 ProSiteProfiles 'Homeobox' domain profile. 181 241 IPR001356 GO:0003677
Acco01g2907 371 SUPERFAMILY Homeodomain-like 170 242 IPR009057 -
Acco01g2907 371 SMART halz 241 285 IPR003106 GO:0006355|GO:0043565
Acco01g2907 371 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 44 318 - -
Acco01g2907 371 MobiDBLite consensus disorder prediction 167 187 - -
Acco01g2907 371 CDD bZIP 234 273 - -
Acco01g2907 371 CDD homeodomain 185 242 IPR001356 GO:0003677
Acco01g2907 371 ProSitePatterns 'Homeobox' domain signature. 216 239 IPR017970 GO:0000981|GO:0006355
Acco01g2907 371 MobiDBLite consensus disorder prediction 1 21 - -
Acco01g2907 371 MobiDBLite consensus disorder prediction 40 67 - -
Acco01g2907 371 MobiDBLite consensus disorder prediction 34 67 - -
Acco01g2907 371 Pfam HD-ZIP protein N terminus 97 138 IPR006712 GO:0005634
Acco01g2907 371 FunFam Homeobox-leucine zipper protein 18 170 246 - -
Acco01g2907 371 Coils Coil 254 277 - -
Acco01g2907 371 MobiDBLite consensus disorder prediction 79 134 - -
Acco01g2907 371 Pfam Homeobox associated leucine zipper 241 275 IPR003106 GO:0006355|GO:0043565
Acco01g2907 371 Gene3D - 189 239 - -
Acco01g2907 371 MobiDBLite consensus disorder prediction 171 187 - -
Acco01g2907 371 SMART HOX_1 183 245 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2907 Acco-ChrAcco01 46271855 46273286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2907 97 301 Homeobox Transcription Factor Family AT2G44910 58.173 2.38e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco01g2907 Homeodomain 4e-15 CL0123