Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2903 ATGGAAAACCAACCCAGAAGCCCAGAGACTAATCCACACCACCCCAAGTGGGGCTCCTTGGAGGAGCTTTTACTTGCCTGCGCCGTCCAGCGTCATGGCTTTAAGGATTGGGACGCCGTCGCCATGGAGGTTCAGACCCGAACCACCCTCCCCAACTTTCTTGTTACCGCCAACCACTGCCGCCAGAGATTCCTCGATCTCAGGCGCCGATTCACCGCCAACCTCGACGACGCCGTCACCGACACCCTTGCCGCCGGTGACGACGTCGATCATGTCCCCTGGCTTGACGAATTGAGGAAACTCCGCGTCTCCGAACTCCAGGAAGCCGTCCAGCGGTCTGACGTCTCCATTCTGTCGTTGCAGCTGAAGGTAAAGAGGTTGGAGGAAGAGAGAGGCAAGAGTTTGAAGGAGAACGTCGGAGAAGAGGGAGAAAAACCGGATCTGGCCGGCTCCGGCGACCTGAAATCGCAAAAGGACAAAAAAGGCGGACTTGAAAAAGTTCCAGAGCCGACGAGTGCCGAACCGGCTACGCGGCTTGACGAGGATCATAATATTAAGCAACCGGCAAGTGACGAATCCGACCGCGAAAATCAGTCCGTGAATGAGTCTAACTCGACGGTTTCCGTTGGGAAAACCGGGGAGGGAGAAATTAAACTAGAACCGAACCCGGATCAGGCCGGTCCGAATGAACCGGATGCGGTCGAGAGGAAGGCCAAACCGCTCGGAGAAGAATCTAATAACGGAAGCTACGATGCGGCGGCGAAAGTGCCGACAGGCGATTCACTTCCCCCGAGCGAGGAGAGGAAGGTGGAGGACTCGTCTGAGTTGCGAGACTCGGTGACGAACTCGAGGGATGGTGGTGGCGAGGGAGGAACAAGGGAAAGCAGTGAGGTGCAGAGCTCCGCGAGTTTGACGAGGAAAAGAAAGCCGAGGCGGAGGAAGGAGGGGGAGGAGCCGCCGGAGAACGACGAGGTGTCCGTGAAAGTTCAGCCGTTGATTGCGGTACTGGACTCTATCAAGGGTCATGATCACAGCTCATTGTTCGAGCGCCGTCTCGAGAACCAGGAACTAGAAAAATACAAGAAAGTAGTGCGACAACAAATGGATTATGAAACTATACAACGGCGACTCCGAAACGGGACTTATTCCTGCTGCACTCATGCTTTCTTCCGTGATCTTCTCCTCCTCTTCACCAACGCCGCCACCTTCTTCCCCAAAGACTCTGCCGAATCATCTGCTGCTCATCAGTTGGGCCAACTTGTCTCTGCCGAGGTTGCACACCGCATTCCGATGAGCCGACCGGAGCCACTTACCAGAAGCCCAGACTCACTCCCACCCAACCCATCATCCTCATCAAAACCAAACTCTGATTCTCTCTTGTCAAAACACAAAGCTTCTGCTCCTATACTGTTCAGCAGGAAACGCAGTGCATTCTCGGCTAAACCTTCTATCTCCTCCGCCCCATTTGGCCAAAAGGGTGACTTAACAGGTCATGAGAAGAAGAAGCCAGCCGCAGATACAAAACCACCCCCACTGAAGCCGTCTTCTTCTGATACAGACGATGAACCTCCCAAAAAAAAGGAAAAGCCCATCACCAGAGTAAGAAGCCTGAGAAGAAGCAACAAAAACCTCACAGGCAACTCCAACAAGAAGGCAGGCACGATCAGCAAGCCATCAGAGCCGCCAAAACCAGATAAGAGCAAAGCAGAGGGTTCTGCAGGATCAGATAAAAAGAGGAGCGCCGCAGTAGATTTCTTGAAAAGGATAAAGCGAAGTGCTCCCGCGGAGGCATTGAGAAGTGGTGGTGGTGGTGGTAGTGGAAGTAGTGGCAAAGGTGGGGGATGTAGTGGGAAAGACCAGAAGAAGATAATCAGTGGTGGCAAAGGGAAAGAAAAAGCATCCAAGCAGGGCGGCGGTGGCGGCAGTAGCAGCTCGGGTGACAAAAAGAATAATGAGAATGAGAATAGTAGTCAATCGAAGAGGAGTGTAGGGAGGCCTCCAAAGAAGGTGGTGGCAGAAGCTAGTAATGTTTCTGCAAAGCGGCGGAGGGAAAATGGAGGAAAGGAAAAGAGGCCCAAGAAGCGATCAAAGAGGTGA 2097 0.5341 MENQPRSPETNPHHPKWGSLEELLLACAVQRHGFKDWDAVAMEVQTRTTLPNFLVTANHCRQRFLDLRRRFTANLDDAVTDTLAAGDDVDHVPWLDELRKLRVSELQEAVQRSDVSILSLQLKVKRLEEERGKSLKENVGEEGEKPDLAGSGDLKSQKDKKGGLEKVPEPTSAEPATRLDEDHNIKQPASDESDRENQSVNESNSTVSVGKTGEGEIKLEPNPDQAGPNEPDAVERKAKPLGEESNNGSYDAAAKVPTGDSLPPSEERKVEDSSELRDSVTNSRDGGGEGGTRESSEVQSSASLTRKRKPRRRKEGEEPPENDEVSVKVQPLIAVLDSIKGHDHSSLFERRLENQELEKYKKVVRQQMDYETIQRRLRNGTYSCCTHAFFRDLLLLFTNAATFFPKDSAESSAAHQLGQLVSAEVAHRIPMSRPEPLTRSPDSLPPNPSSSSKPNSDSLLSKHKASAPILFSRKRSAFSAKPSISSAPFGQKGDLTGHEKKKPAADTKPPPLKPSSSDTDDEPPKKKEKPITRVRSLRRSNKNLTGNSNKKAGTISKPSEPPKPDKSKAEGSAGSDKKRSAAVDFLKRIKRSAPAEALRSGGGGGSGSSGKGGGCSGKDQKKIISGGKGKEKASKQGGGGGSSSSGDKKNNENENSSQSKRSVGRPPKKVVAEASNVSAKRRRENGGKEKRPKKRSKR 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2903 698 Coils Coil 117 137 - -
Acco01g2903 698 CDD Bromodomain 335 425 - -
Acco01g2903 698 MobiDBLite consensus disorder prediction 561 594 - -
Acco01g2903 698 MobiDBLite consensus disorder prediction 444 462 - -
Acco01g2903 698 Gene3D - 321 429 IPR036427 GO:0005515
Acco01g2903 698 SMART sant 13 70 IPR001005 -
Acco01g2903 698 SUPERFAMILY Homeodomain-like 13 68 IPR009057 -
Acco01g2903 698 MobiDBLite consensus disorder prediction 537 555 - -
Acco01g2903 698 MobiDBLite consensus disorder prediction 134 167 - -
Acco01g2903 698 MobiDBLite consensus disorder prediction 637 663 - -
Acco01g2903 698 MobiDBLite consensus disorder prediction 432 462 - -
Acco01g2903 698 MobiDBLite consensus disorder prediction 285 303 - -
Acco01g2903 698 MobiDBLite consensus disorder prediction 480 698 - -
Acco01g2903 698 ProSiteProfiles SANT domain profile. 12 48 IPR017884 -
Acco01g2903 698 Pfam Bromodomain 334 414 IPR001487 GO:0005515
Acco01g2903 698 CDD SANT 16 64 IPR001005 -
Acco01g2903 698 Gene3D - 8 67 - -
Acco01g2903 698 MobiDBLite consensus disorder prediction 134 328 - -
Acco01g2903 698 MobiDBLite consensus disorder prediction 262 279 - -
Acco01g2903 698 ProSiteProfiles Bromodomain profile. 340 411 IPR001487 GO:0005515
Acco01g2903 698 Pfam Myb-like DNA-binding domain 16 67 IPR001005 -
Acco01g2903 698 MobiDBLite consensus disorder prediction 175 198 - -
Acco01g2903 698 SUPERFAMILY Bromodomain 311 426 IPR036427 GO:0005515
Acco01g2903 698 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 8 698 - -
Acco01g2903 698 SMART bromo_6 121 430 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2903 Acco-ChrAcco01 46226380 46236243 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco01g2903 Bromodomain 1.9e-13 No_clan