Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2871 ATGTCTCGCCGCGGCGGAAAGCAACCCCAGCACCAACCTTCTCCGGCGCCATCTCAATCTGCCCGGGGTCCAGATGTTGCTCCAGCCAGGCCACAAGGCGCCGCTCCTTCTTCTGCTCCGACTGATGATTTGAGGCAGCTAACGTTGCAGTCTCCGGCGCTGTCATCGCCAGAGGCCACGATATTCCCCGACCGACCAGATTTTGGTACAATGGGGAGAAGCGTTAAAGTCCGTGCAAATCACTTCCTGGTCCAATTAGCTGATAAGGAGCTTCACCACTACGATAGTCTTTTCACAGCAGGTCTTTTGCCCTTTGATTCAATGCAATTTGTTGTCAAGTTGGTAGCCAAAGATGAACATGGCAGTTCTTCTGGTTCAACGAGGAACGAACGTGAGCGCGAGTTTAAGGTTACCATTCGTTATGCTTCCAACGCTGATCTCCATCATTTGCGACAGTTTCTAAGAAGTCTACAGCCGGACAATCCTCAAAAAACAATTCAAGCACTTGATATTGTCCTGAGGGCATCACCATCTGAGAAGTATACTGTGGTTGGAAAATCTTTTTTCTCACCAAGTTTGGGTAAAACTGGTCAGCTGGGTGATGGAATAGAATATTGGAGAGGATATTATCAAACTCTTCGCCCGACCCAGATGGGTCTTTCCCTTAATATTGGTCATACTTCATTCCATTTTTATGATGCTGTATCGGCAAGGCCGTTTTATGAAAATATCCTTGTGACTGAGTTTATTGCAAAGCGTTTTGAATTTAATTTTTCGAGGCGTCTGTCTGATCAGGACAGAATTAAGGTAGAGAGAGCTTTGAGAAGAGTAAAGGTAGAAGTTACTACTGGTAATGTTACTAGAAGTTACATAATTACTGGACTCTCAAAGGATCCACTGAGTGAGTTGATGTTCACTCTTGATGACAAGGAAACGAAAACAACTACAACTGTTGTTCAATATTTTCGTGAGAAATACAATGTTGGGCTTAAATATTTGTCTCTTCCTGCCCTCCAAGCCGGGAATGATGCAAAACCTATTTATTTGCCTATGGAGCTTTGCAAGATAGCTGCAGGGCAAAGGTACTCAAAGAAACTGAATGAGCGGCAAGTTTCTGCTCTTTTGAAAGCAACCTGTCAACGACCTCTTGACAGGGAGAAGGACATCAGAGGGATGGCCGGACGTAACAATTTTAACGGAGACAAGCTCGTGCGAGAATTTGGGATTGGAGTGGTTGAAGAACTGGCATTGTGTGATGCACGTGTTTTGCCTCCTCCAAGGCTTCAATATCATAAAACTGGGAAGGAAGAGATTGTTCAACCCTTGATGGGTCAGTGGAATATGATAAACAAGAAAATGTATAATGCTGGGGAAGTGCAATATTGGACTTGTCTCAACTTTTCTACTCAAGTGAACCGACAGTTGACAGTTGAATTCTGTAATAAGTTGATCAATATGTGCACCAGTAAGGGAATGGTTTTCAATCGAACCCCTTTACTTCCTATAAGGTTAGATCGTCCTTGTCAAATAGAGGGGGCTCTTAAAAGAGTTTACAAGCAAGCTGGTAAAGGGAAACTTCAGCTGTTGATTATAATCTTGCCCACCTTACAAGGTTCTTACGTTTTGATGGATAAAATTCCTCATGTGACTGATGGTTCGCTCCCTACGATAATATTTGGTGCGGATGTAACACACCCTCAGTCAGGGGAGGACTCGAGCCCTTCTATAGCAGCTGTAGTAGCATCCATGGATTGGCCAGGGGTCTCTAAGTATCGTGGAATTGTTTCTGCCCAGTCACCCAGAGAAGAGATCATACTAGATCTCTACAAAACTTATCAGGATGCTGACAAGGGAGTTAAACCTGGTGGAATGATCAGGGAGCTACTTAAGGCATTCTATAAATTAAACAAGGCTAGTAAGCCAGACAATATTATATTCTACAGGGATGGAGTTGGTGAAGGCCAATTCAGTCAGGTTTTACTCCATGAAATGCAAGCCATAAGAAAGGCATGTGCCTCTTTAGAGGAAGGATATCTGCCAAAAGTAACCTTCTTGGTGGTACAAAAAAGACACCACACCCGATTCTTTCCTGTTGATAGTGATCAGACGGATGGAAGTGGAAATATTTTGCCAGGCACTGTTGTTGATACTCATATTTGCCATCCAAGCGAGTTTGATTTTTACCTCAACAGCCATGCTGGCATGAAGGGAACTAGCCGACCTACGCACTATCATGTTCTATTTGATGAGAACAACTTCACAGCCGATGAGTTGCAGACTTTCACCAATAACCTGTATGCAAGGTGCACTAAGTCAGTGTCAATAGTTCCTCCTGTATACTATGCCCATTTGGCTGCCTTCCGCGCTCGCTGCTATATTGAAGGTCAGACATCAGGGGTGGATTCTGGAAGTGGAAGTAGGAGCACTAATGTAGCGGTAACTCTGCCGGCAATCGTGGACAATGTGAAGAATGTTATGTATTATTGTTAA 2490 0.4398 MSRRGGKQPQHQPSPAPSQSARGPDVAPARPQGAAPSSAPTDDLRQLTLQSPALSSPEATIFPDRPDFGTMGRSVKVRANHFLVQLADKELHHYDSLFTAGLLPFDSMQFVVKLVAKDEHGSSSGSTRNEREREFKVTIRYASNADLHHLRQFLRSLQPDNPQKTIQALDIVLRASPSEKYTVVGKSFFSPSLGKTGQLGDGIEYWRGYYQTLRPTQMGLSLNIGHTSFHFYDAVSARPFYENILVTEFIAKRFEFNFSRRLSDQDRIKVERALRRVKVEVTTGNVTRSYIITGLSKDPLSELMFTLDDKETKTTTTVVQYFREKYNVGLKYLSLPALQAGNDAKPIYLPMELCKIAAGQRYSKKLNERQVSALLKATCQRPLDREKDIRGMAGRNNFNGDKLVREFGIGVVEELALCDARVLPPPRLQYHKTGKEEIVQPLMGQWNMINKKMYNAGEVQYWTCLNFSTQVNRQLTVEFCNKLINMCTSKGMVFNRTPLLPIRLDRPCQIEGALKRVYKQAGKGKLQLLIIILPTLQGSYVLMDKIPHVTDGSLPTIIFGADVTHPQSGEDSSPSIAAVVASMDWPGVSKYRGIVSAQSPREEIILDLYKTYQDADKGVKPGGMIRELLKAFYKLNKASKPDNIIFYRDGVGEGQFSQVLLHEMQAIRKACASLEEGYLPKVTFLVVQKRHHTRFFPVDSDQTDGSGNILPGTVVDTHICHPSEFDFYLNSHAGMKGTSRPTHYHVLFDENNFTADELQTFTNNLYARCTKSVSIVPPVYYAHLAAFRARCYIEGQTSGVDSGSGSRSTNVAVTLPAIVDNVKNVMYYC 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2871 829 Pfam N-terminal domain of argonaute 96 173 IPR032474 -
Acco01g2871 829 Pfam Argonaute linker 2 domain 384 430 IPR032472 -
Acco01g2871 829 Pfam Mid domain of argonaute 441 519 IPR032473 -
Acco01g2871 829 ProSiteProfiles Piwi domain profile. 540 794 IPR003165 GO:0003676
Acco01g2871 829 SMART PAZ_2_a_3 253 383 IPR003100 GO:0005515
Acco01g2871 829 MobiDBLite consensus disorder prediction 1 19 - -
Acco01g2871 829 Gene3D - 556 829 IPR036397 GO:0003676
Acco01g2871 829 SUPERFAMILY PAZ domain 239 399 IPR036085 GO:0005515
Acco01g2871 829 Gene3D paz domain 239 362 - -
Acco01g2871 829 ProSiteProfiles PAZ domain profile. 244 358 IPR003100 GO:0005515
Acco01g2871 829 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 540 795 - -
Acco01g2871 829 CDD PAZ_argonaute_like 246 357 - -
Acco01g2871 829 CDD Piwi_ago-like 404 793 IPR045246 -
Acco01g2871 829 SMART Piwi_a_2 490 794 IPR003165 GO:0003676
Acco01g2871 829 Pfam Piwi domain 547 793 IPR003165 GO:0003676
Acco01g2871 829 Gene3D - 422 555 - -
Acco01g2871 829 MobiDBLite consensus disorder prediction 1 43 - -
Acco01g2871 829 FunFam protein argonaute 10-like 545 829 - -
Acco01g2871 829 SUPERFAMILY Ribonuclease H-like 514 794 IPR012337 -
Acco01g2871 829 SMART DUF1785_2 182 243 IPR014811 -
Acco01g2871 829 Pfam PAZ domain 266 373 IPR003100 GO:0005515
Acco01g2871 829 Pfam Argonaute linker 1 domain 184 224 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2871 Acco-ChrAcco01 45990342 45995529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2871 52 829 Eukaryotic Initiation Factors Gene Family AT1G48410 49.945 0.0 802