Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2865 ATGCAAGGCGTGGTTAATTTCTTCAGTCGGATATCAATCCTCGTAGACCGGAACACGCAGCAGGCTTTCAACTTGTTCATGAACGCTCTTCTTCGATCAGGCGGAATTATTGTTCAATTCATCAGTTGTAGGAAGAGCCCTGTCTTTTTCCGATTAATCTTGTTCGAACGAAGAAGGCGATTTGTGTTTTGCTGCATTATTTTCTGTTTGGTGATGGATGACGGAGTGCCTCCAAGCCTTTTTGCTAATGATGGTTCATTCTTGGAGAGGTTTAAGCAACTTCAACAAGAGCAGGAGAAGAAAAATGAAAAATTAGAGGGTTCTAAACCTATTAAAATTGTCTCAGGGTCTTTGACTCCTAATCTTTCCATGAATAAAAGGACCTCTGCAGACTTGAAGGCTAATAATACACAGAAAACATCCCAGGCTGGTTCCAGTGGCAAACTTGCATTCAGTATAAAACAAAAGTCTAAGCTAGTGCCTCCACCTGTTAAATTAAGTGCAGATGAAGAAGAAGAAACAGATGGTAATAATGTTTCAAGTGATGCACCCCTAAAACGACAAAAGTTGGGGAGTGAAGATGGCATTGACCGATCATTAAGACAATCTGATGATGCACCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGAGAAACTAGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAGGATGTTACACGTCAAAAAAATCCAGGGAACACCCCTTTCAAGTTTTTATTTGATGAGAAATGTGCCGACTACAAATATTATGAATATCGACTAGCCCAGGAGGAAAAGACTCTAGGGCAGCCCCAGGAATCACAGACATCACATAATGGGCGTACTAGCTCCTCATCTTCTAGATCAACCAATGTTCCTCGGAGATCATCTCATCAACATTCAGCTTACCAAATTCCTGCATCTGCTCTGTATGAAAGTTCTGAAGATCCTGCAGCTTATGGATCTTCAGGTCAAGCAGCCCCAGGAGGAAGCAATAATGATACTGGTGGATCATCAAATGCTGATTCTTTAGCATTGATGGAGTTCTACATGAAGAAGGCTGCACAGGAAGAGAAGATGAAAAGACCTAAGCAATCTAAAGATGAGATGCCCCCTCCTGCATCTCTTCAAGCTTCTTCTAAAAAAGGTCATCACATGGGTGATTACATTCCCCAGGAAGAACTAGAGAAGTTCATGGCTAACTGTAATGATGCAGCATCACTGAAAGCTGCTAAGGAGGCTGCAGAGAAGGCTAAAATTCAGGCTGATAATGTGGGTCACAAGCTTTTGTCAAAAATGGGATGGAAAGAAGGTGAGGGTCTGGGCAGCTCCAGGAAAGGTATTTCAGATCCAATAATGGCTGGTAATGTTAAGATGAACAACTTGGGGGTTGGTGCAAACAACCCTGGGGAGGTGACTCCTGAAGACGACATATATGAGCAATACAAAAAGCGGATGATGCTTGGTTATCGTTACAGACCCAATCCTCTGAACAATCCTCGCAAGGCTTATTACTGA 1530 0.4242 MQGVVNFFSRISILVDRNTQQAFNLFMNALLRSGGIIVQFISCRKSPVFFRLILFERRRRFVFCCIIFCLVMDDGVPPSLFANDGSFLERFKQLQQEQEKKNEKLEGSKPIKIVSGSLTPNLSMNKRTSADLKANNTQKTSQAGSSGKLAFSIKQKSKLVPPPVKLSADEEEETDGNNVSSDAPLKRQKLGSEDGIDRSLRQSDDAPPSPSDPTVKKVAEKLASFVAKNGRQFEDVTRQKNPGNTPFKFLFDEKCADYKYYEYRLAQEEKTLGQPQESQTSHNGRTSSSSSRSTNVPRRSSHQHSAYQIPASALYESSEDPAAYGSSGQAAPGGSNNDTGGSSNADSLALMEFYMKKAAQEEKMKRPKQSKDEMPPPASLQASSKKGHHMGDYIPQEELEKFMANCNDAASLKAAKEAAEKAKIQADNVGHKLLSKMGWKEGEGLGSSRKGISDPIMAGNVKMNNLGVGANNPGEVTPEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2865 509 SMART G-patch_5 424 471 IPR000467 GO:0003676
Acco01g2865 509 MobiDBLite consensus disorder prediction 129 152 - -
Acco01g2865 509 MobiDBLite consensus disorder prediction 129 216 - -
Acco01g2865 509 SUPERFAMILY Surp module (SWAP domain) 206 268 IPR035967 GO:0003723|GO:0006396
Acco01g2865 509 Coils Coil 88 108 - -
Acco01g2865 509 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 72 509 IPR040169 -
Acco01g2865 509 Pfam Surp module 218 267 IPR000061 GO:0003723|GO:0006396
Acco01g2865 509 ProSiteProfiles G-patch domain profile. 426 473 IPR000467 GO:0003676
Acco01g2865 509 MobiDBLite consensus disorder prediction 329 345 - -
Acco01g2865 509 Pfam G-patch domain 427 470 IPR000467 GO:0003676
Acco01g2865 509 SMART surpneu2 216 270 IPR000061 GO:0003723|GO:0006396
Acco01g2865 509 MobiDBLite consensus disorder prediction 187 201 - -
Acco01g2865 509 Gene3D Surp module 201 272 IPR035967 GO:0003723|GO:0006396
Acco01g2865 509 MobiDBLite consensus disorder prediction 271 312 - -
Acco01g2865 509 MobiDBLite consensus disorder prediction 359 388 - -
Acco01g2865 509 ProSiteProfiles SURP motif repeat profile. 218 261 IPR000061 GO:0003723|GO:0006396
Acco01g2865 509 MobiDBLite consensus disorder prediction 270 345 - -
Acco01g2865 509 Coils Coil 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2865 Acco-ChrAcco01 45923818 45932693 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2865 406 482 C2H2 Transcription Factor Family AT5G26610 37.179 1.42e-08 54.3