Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2858 ATGAATATCGATGCTGTTTTTAGGTTGCTTGGCATTGTTCAGAACTCTATACAAGGGCGAAATTTGATTTCGTTGCTCTTGTTTATGATTGTTTTGTCTTTCTATTTCAGCTTGCATATTATTCTAACTTCTATACTATTATTTTCTGAATCCTCTAGGGTTCTTTGCAAATTCTTTGCCCAGGGAGCATGTTTGAAAGGGGGGCACTGTGAATTTTCTCACGACTGGAAAGATCCTCCAAACAATATATGCACGTTTTATCAGAAAGGGGTCTGTGCCTATGGTAGTCGATGCAGATATGACCATGTCAAAGCTTCCCGTGAACAGTCCCATCATCCATCTTCTTCTGCAAGTTTACACCCCCTAAATTCAGATTCTTCTATACTTGGTAGTACTAGAGTTACATCAAATGGGGCTGCTACAATTAATGAGTTATCTTCTCATAGTGGACCTTCCTTTCCTATTATTCCTGCATGGAATGGAGAATCTGAGTTTCATGTTCCTGATTGTTTTAATGCTTGGAATCCAGAACCTGGGTATCAGGATTTCTTAGTGGATAGTGGTGTCAGTGAACCCAGAATTACTGATCCTTCTGAGCATCCTATCTGTTCATTCGCTGCTGCTGGTAATTGCCCCAGGAATGAGAAATGCCCTTTTATTCATGGAGATTTGTGTCCTACCTGTGGAAAGCAATGCTTACATCCTTTTCGACCTGAAGAGAGAGAGGAACATATGATTACATGCCAAAAAAAGCAAAAGCATCTTGAGGCATTGAAACGAAGTCAAGAAATTGAATGCAGTGTTTGCCTTGAGCGTGTTCTTTCAAAGCCCTCAGCAGCTGAACGCAAGTTTGGGTTACTATCTGAATGTGATCATCCCTTCTGCATATCTTGTATTAGGAATTGGCGTAGTAGTAACCCAACCTTGGGAATGGATGTGAATACCACATTGAGGGCCTGTCCAATCTGCCGTAAGCTCTCTTACTTTGTGATTCCAAGTGTCATTTGGTACTCTACAACAGAAGAAAAAAATGAAATCATCGACAGCTACAAGGAAAAGCTCAAGTCAATTGATTGCAAACATTTTGACTTTGGGAGTGGAAACTGCCCTTTTGGTACTAGCTGTTTCTACAAGCATGCTTACCGTGATGGCAGACTTGAGGAAGTAGTTCTGAGGCATCTTGGGGCTGCAGATGGCGATGCGGTGATTGCTAAAGACATCAGGCTATCAGATTTCCTTTCTAATATGCATTTAAGATGA 1260 0.4103 MNIDAVFRLLGIVQNSIQGRNLISLLLFMIVLSFYFSLHIILTSILLFSESSRVLCKFFAQGACLKGGHCEFSHDWKDPPNNICTFYQKGVCAYGSRCRYDHVKASREQSHHPSSSASLHPLNSDSSILGSTRVTSNGAATINELSSHSGPSFPIIPAWNGESEFHVPDCFNAWNPEPGYQDFLVDSGVSEPRITDPSEHPICSFAAAGNCPRNEKCPFIHGDLCPTCGKQCLHPFRPEEREEHMITCQKKQKHLEALKRSQEIECSVCLERVLSKPSAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNTTLRACPICRKLSYFVIPSVIWYSTTEEKNEIIDSYKEKLKSIDCKHFDFGSGNCPFGTSCFYKHAYRDGRLEEVVLRHLGAADGDAVIAKDIRLSDFLSNMHLR 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2858 419 ProSiteProfiles Zinc finger C3H1-type profile. 197 224 IPR000571 GO:0046872
Acco01g2858 419 ProSiteProfiles Zinc finger RING-type profile. 266 324 IPR001841 -
Acco01g2858 419 Pfam RNA-binding, Nab2-type zinc finger 55 74 - -
Acco01g2858 419 Pfam RNA-binding, Nab2-type zinc finger 358 380 - -
Acco01g2858 419 Gene3D - 46 81 - -
Acco01g2858 419 SMART c3hfinal6 51 76 IPR000571 GO:0046872
Acco01g2858 419 SMART c3hfinal6 353 381 IPR000571 GO:0046872
Acco01g2858 419 SMART c3hfinal6 79 104 IPR000571 GO:0046872
Acco01g2858 419 SMART c3hfinal6 198 223 IPR000571 GO:0046872
Acco01g2858 419 ProSiteProfiles Zinc finger C3H1-type profile. 78 105 IPR000571 GO:0046872
Acco01g2858 419 SUPERFAMILY RING/U-box 255 330 - -
Acco01g2858 419 SMART ring_2 266 323 IPR001841 -
Acco01g2858 419 Pfam CCCH-type zinc finger 83 102 IPR041367 -
Acco01g2858 419 Pfam Zinc finger, C3HC4 type (RING finger) 266 323 IPR018957 GO:0046872
Acco01g2858 419 CDD RING-HC_MKRN 264 324 - -
Acco01g2858 419 ProSiteProfiles Zinc finger C3H1-type profile. 50 77 IPR000571 GO:0046872
Acco01g2858 419 ProSiteProfiles Zinc finger C3H1-type profile. 353 382 IPR000571 GO:0046872
Acco01g2858 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 200 222 IPR000571 GO:0046872
Acco01g2858 419 ProSitePatterns Zinc finger RING-type signature. 290 299 IPR017907 -
Acco01g2858 419 PANTHER MAKORIN-RELATED 54 398 IPR045072 GO:0000209|GO:0061630
Acco01g2858 419 SUPERFAMILY CCCH zinc finger 52 75 IPR036855 GO:0046872
Acco01g2858 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 329 IPR013083 -
Acco01g2858 419 Gene3D - 82 225 - -
Acco01g2858 419 SUPERFAMILY CCCH zinc finger 81 102 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2858 Acco-ChrAcco01 45864640 45867366 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco01g2858 zf-C3HC4 5.7e-07 CL0229