Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2856 ATGTCTAAGAGGGTTTGCAAGTTCTATGCCCGTGGAAAATGCTTCAGAGGGGAGCAATGTGATTATTCTCATGACGGCCAGGATACTCCTGTTGATGTCTGCAAATTCTATCAGAAGGGACACTGCTCCTATGGTAGCCAATGTAGATATAGACATGTCAAAGCTTCCCAGGCAATTTCTACGTCATCTTCAGAAAATGGTCGGCAATCTCTGCCTTCAAAGTCTGTAGTAGATAGTAATGCTAGAGGAAAATCTAGGTGGATCCCCAAGAATACTAATTTGGAAAGTACTGGTCATGTTAAGCATCTGAATTCTCTAAGGAATGATGATGTTGGTGAATCTAGTAATGCTGTACCTTCAAAGCGTATCCTTTGTACATATGCGGCAGCCAACTGCCCCTTAGGGAAAAAATGCTTGCGCATTCATGGAGACCAGTGTCTGTATTGTAGGAAGTACTGCTTGCATCCTGCTGACCAAAGGGAGAGAGAGAATCATTTGAATTCTTGTGACAAGAAGGAAAAATACAATCAGGCTCTAAAGGATAGTCAAGAAATAGAGTGCAATATTTGCTTGGATCATGTTCTTTCAAAGCCTAAAGCATCTGAATGTAGGTTTGGGATGCTTCCTGAATGCGACCATGCCTTCTGTTTATCCTGTATCAGGAATTGGCGGAACAGTGCCTCAAACTCTGAAACGGACATCTTTAAAATCGCTAATAATAGTACAGTGAGAACTTGCCCTGTGTGTCGCAAGCTATCGTATTTTGTGATTCCAACACCTATATGGTACTCCACAAAGGAAGAAAAGCAGGAAATTATTGACAACTACAAGGCAAATTGCAAGTTGATTGATTGCAAGCATTTTGACTTTGGAAATGGGAACTGTCCATTCGGAGCTAGGTGTTTCTACAAGCATACTGTGAAGCCAGGCTCTGTGATGTGGAGACATGGTAGGCCGCTGCCACCACCGCGCCGCCGCAGAGCTCAAAATAATATGGATATGTATGAAATGATAGATATGCTCAGTGGATTTGATTTGCAAAGTGGTGAATTCCTTTCCATCATGCGGGACTCTGAGTTTTTTGGTGATATGGATCCTTACGAGATGATGGCTGTATCGGATATGCTGGCTTCTTCTGGTTCAGGACCTAGGTTTTTTGATGACGAAGATTCTGACGATGAGGGGATGGGGTTTTTTGAGATGGCTGCTCTATCAGCGTCGCTGGATGAACCTTTTGAGGATTTCGACAACGATGAATATGATCCTTCAGGAGCAACATTCTTATCAATGTTAGTGCAATCTAATATGGAAGAAGATAGTGAAGAGGACGAAGATGACTAG 1341 0.4258 MSKRVCKFYARGKCFRGEQCDYSHDGQDTPVDVCKFYQKGHCSYGSQCRYRHVKASQAISTSSSENGRQSLPSKSVVDSNARGKSRWIPKNTNLESTGHVKHLNSLRNDDVGESSNAVPSKRILCTYAAANCPLGKKCLRIHGDQCLYCRKYCLHPADQRERENHLNSCDKKEKYNQALKDSQEIECNICLDHVLSKPKASECRFGMLPECDHAFCLSCIRNWRNSASNSETDIFKIANNSTVRTCPVCRKLSYFVIPTPIWYSTKEEKQEIIDNYKANCKLIDCKHFDFGNGNCPFGARCFYKHTVKPGSVMWRHGRPLPPPRRRRAQNNMDMYEMIDMLSGFDLQSGEFLSIMRDSEFFGDMDPYEMMAVSDMLASSGSGPRFFDDEDSDDEGMGFFEMAALSASLDEPFEDFDNDEYDPSGATFLSMLVQSNMEEDSEEDEDD 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2856 446 Gene3D - 1 67 - -
Acco01g2856 446 SMART c3hfinal6 279 307 IPR000571 GO:0046872
Acco01g2856 446 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Acco01g2856 446 SMART c3hfinal6 1 26 IPR000571 GO:0046872
Acco01g2856 446 SMART c3hfinal6 120 144 IPR000571 GO:0046872
Acco01g2856 446 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Acco01g2856 446 SMART ring_2 187 249 IPR001841 -
Acco01g2856 446 ProSiteProfiles Zinc finger RING-type profile. 187 250 IPR001841 -
Acco01g2856 446 Pfam Zinc finger, C3HC4 type (RING finger) 187 249 IPR018957 GO:0046872
Acco01g2856 446 SUPERFAMILY RING/U-box 177 257 - -
Acco01g2856 446 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Acco01g2856 446 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Acco01g2856 446 PANTHER MAKORIN-RELATED 1 345 IPR045072 GO:0000209|GO:0061630
Acco01g2856 446 CDD RING-HC_MKRN 185 250 - -
Acco01g2856 446 ProSiteProfiles Zinc finger C3H1-type profile. 119 145 IPR000571 GO:0046872
Acco01g2856 446 Pfam CCCH-type zinc finger 33 52 IPR041367 -
Acco01g2856 446 SUPERFAMILY CCCH zinc finger 29 52 IPR036855 GO:0046872
Acco01g2856 446 ProSiteProfiles Zinc finger C3H1-type profile. 279 308 IPR000571 GO:0046872
Acco01g2856 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 282 IPR013083 -
Acco01g2856 446 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Acco01g2856 446 MobiDBLite consensus disorder prediction 59 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2856 Acco-ChrAcco01 45855530 45858800 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco01g2856 zf-C3HC4 8.1e-07 CL0229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g2856 01 45855530 45858800 Acco01g2856 01 45855530 45858800 ECH