Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2854 ATGGCAGATCCTCATCAGTCTAATTTCTTCTCAAAGTGCTTCAACTTCGTCCCCCTCCATCCTCACTTGTACTCTCCCAATTCCTACAGCTCCTTCTCCATTCAATTCCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTGCAGCTGCAAGAGAGGCCCTTCCTCTGCTGAACAATCTCAATCTCCTCACTAACCACTCCAACCAAACACCTACTCATGCACATGTACAACCCTCCACCAATAATAACAAGGAACCATTAATTCCACACAACGAAGAGTCTTGTTGTGATGAAACTGTCACTGTTGCTCTGCGCATAGGACTTCCCTCCATGACTTCTGCTACCACTACTAGCAGCAGCAGTAGTATTACTCAGATTGAAACGACAACCACCACCATGGACAAAGATGTCGTTTCTGGTGGTCACTACTCTTTTGATGCCTTGAACAAGGGCCAGTACTGGATCCCCACTCCTTCTCAGATTCTCATTGGCCCTACTCAGTTTTCTTGCCATGTCTGCTCCAAAACCTTCAACCGATACAATAATCTTCAGATGCATATGTGGGGGCATGGATCTCAGTACAGGAAGGGACCAGATTCTCTAAGAGGAACACAACCTACGGCAATGCTAAGGCTTCCATGTTTCTGTTGTGTACCAAACTGCAAGCACAACATAGACCACCCAAGGGCAAGGCCTCTGAAGGATTTCAGAACCCTCCAAACTCATTACAAGAGGAAGCATGGAACCAAACCCTACTTGTGCAGAAAATGCAGCAAGGCTTTCGCCGTGAAAGGTGACTGGAGGACCCACGAGAAGAACTGTGGCAAAATATGGTATTGCCTATGTGGTTCTGACTTTAAACACAAGAGGTCACTTAAGGACCACATTAGGGCTTTTGGCCATGGCCATGGAGGGGATTTTCCTGGCGGCTCTGGCTTTGATAATAATGGCTTGCAGGAAGAAGAAGAAGAAGAAGCTAATTCTGAGATTGAACATGATAATAATAATGGCGACAACTCTATGTGA 1023 0.4663 MADPHQSNFFSKCFNFVPLHPHLYSPNSYSSFSIQFPPPPPPPPPAAAAREALPLLNNLNLLTNHSNQTPTHAHVQPSTNNNKEPLIPHNEESCCDETVTVALRIGLPSMTSATTTSSSSSITQIETTTTTMDKDVVSGGHYSFDALNKGQYWIPTPSQILIGPTQFSCHVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCVPNCKHNIDHPRARPLKDFRTLQTHYKRKHGTKPYLCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIRAFGHGHGGDFPGGSGFDNNGLQEEEEEEANSEIEHDNNNGDNSM 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2854 340 MobiDBLite consensus disorder prediction 305 340 - -
Acco01g2854 340 Gene3D Classic Zinc Finger 210 300 - -
Acco01g2854 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 307 IPR013087 -
Acco01g2854 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 194 IPR013087 -
Acco01g2854 340 Gene3D Classic Zinc Finger 166 189 - -
Acco01g2854 340 SUPERFAMILY beta-beta-alpha zinc fingers 235 271 IPR036236 -
Acco01g2854 340 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Acco01g2854 340 PANTHER ZINC FINGER PROTEIN WIP2 31 334 IPR043584 GO:0003700|GO:0010468
Acco01g2854 340 FunFam Zinc finger protein WIP2 220 302 - -
Acco01g2854 340 SUPERFAMILY beta-beta-alpha zinc fingers 160 189 IPR036236 -
Acco01g2854 340 SMART c2h2final6 167 189 IPR013087 -
Acco01g2854 340 SMART c2h2final6 251 271 IPR013087 -
Acco01g2854 340 SMART c2h2final6 277 300 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2854 Acco-ChrAcco01 45840639 45843277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2854 99 335 C2H2 Transcription Factor Family AT3G57670 62.879 1.32e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco01g2854 None None None