Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2848 ATGGGAAGGGACAAGAACAATAGTAGTAATAGTAGTAGTAGCAGTAATAAGAACAATGGCAACAACAATGTTGTGAAGCTAAGGAAGGGGTTGTGGTCGCCGGAGGAGGATGAGAAGCTGATAAGGTACATGTTGACCAATGGACAAGGTTGTTGGAGTGACATTGCCAGAAATGCAGGCCTTCTACGTTGTGGCAAGAGTTGTCGCCTTCGTTGGATTAATTATCTCAGACCTGACCTCAAGCGAGGTGCTTTCTCTCCCCAAGAAGAACAACTCATTCTTCATTTTCATTCCATTCTTGGCAATAGGTGGTCTCAGATAGCAGCACGTCTTCCAGGACGAACAGACAATGAGATTAAGAATTTTTGGAACTCAACCTTAAAGAAAAGGATGAAAAATAATACTATTTGTACTACTACTACTACTTGCACTGCTACTCCTTCACCAAACAACAGTACAGACTCTTCGTCAAATCATATTATTCTCAATGGCATCACCACCACCTCCATGCCCTTCATCAACGTGACCATGTGCATGGACTCATCACCTTCATCAATATCATCATCTTCATCAGCATCCGTACAATCCATGCAAGCCGCCGCCACGGCTTTTGGTGGTGACCACCAGTTAATGGAGTACCGCTTTTCCATGTTGAATAGTAACAACAGTAATATTGCTTATGACATGCCTGCATGCTTGGCCCAAGTTCGCGGCGGCATGGTGGAGGATGGGTTTTATGGTGGTGATTATGGTAATGGGGTGGTGTTGGAGGGAGAAGATAGTAAAATAATGGGGTTAGAAAGAGAGCTGTGTCTTCCTCATTTGGAGAGTAGAAGCATGGAAGAGAGGTATAATAGTAGTACTAGGGTTGGTCCTATTGATGGGAGAAGTCATATCAACAACAACAACAACAACTACCATTTCAATAATGGTTGCTTCAATGACACTGATCATCACCATCATCAGGACTTGGTTGGATATGGAGATAATAATCATGGGCAATCAGGGGAAAACTTGAGAATGGGGGAATGGGATTTGGAGGGTTTGATGCAAGATATATCCTCTTTTCCTTTCCTTGATTTCCAAGTTGAATGA 1095 0.4292 MGRDKNNSSNSSSSSNKNNGNNNVVKLRKGLWSPEEDEKLIRYMLTNGQGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRGAFSPQEEQLILHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRMKNNTICTTTTTCTATPSPNNSTDSSSNHIILNGITTTSMPFINVTMCMDSSPSSISSSSSASVQSMQAAATAFGGDHQLMEYRFSMLNSNNSNIAYDMPACLAQVRGGMVEDGFYGGDYGNGVVLEGEDSKIMGLERELCLPHLESRSMEERYNSSTRVGPIDGRSHINNNNNNYHFNNGCFNDTDHHHHQDLVGYGDNNHGQSGENLRMGEWDLEGLMQDISSFPFLDFQVE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2848 364 FunFam Transcription factor MYB46 83 160 - -
Acco01g2848 364 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Acco01g2848 364 Gene3D - 26 82 - -
Acco01g2848 364 PANTHER MYB DOMAIN PROTEIN 55 22 285 - -
Acco01g2848 364 SUPERFAMILY Homeodomain-like 27 123 IPR009057 -
Acco01g2848 364 Pfam Myb-like DNA-binding domain 82 126 IPR001005 -
Acco01g2848 364 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Acco01g2848 364 SMART sant 28 78 IPR001005 -
Acco01g2848 364 SMART sant 81 129 IPR001005 -
Acco01g2848 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 76 IPR017930 -
Acco01g2848 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Acco01g2848 364 CDD SANT 32 76 IPR001005 -
Acco01g2848 364 CDD SANT 84 127 IPR001005 -
Acco01g2848 364 Gene3D - 83 155 - -
Acco01g2848 364 MobiDBLite consensus disorder prediction 1 25 - -
Acco01g2848 364 FunFam MYB transcription factor 26 82 - -
Acco01g2848 364 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2848 Acco-ChrAcco01 45786458 45789445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2848 20 364 MYB Transcription Factor Family AT3G08500 46.629 9.08e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco01g2848 Myb_DNA-binding 8.8e-13 CL0123