Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2828 ATGTCTCCAAAACTCCCTCTTCCCTTCATCCTCCTCATCATTTCTCTTATCTCATTACCCTTTTGTTTTGGCTCTCACATTCATCACAACTCTCTCAATGCTCCAAAACATGAACACTTTGGCCTCATGAGAAGATCTCACAGAGCCAGTAAGGTTCCTTCAAGTTCTCATCAAGCAACACTTAGTGTTGATAACTATGGAGCCAAAGCCAGCGGAAACGATGACTCTGAGGCCTTCTTGAAGGCTTGGCAAGAGGCTTGTTCTTCTGGCTCTACTCTTGTTGTCCCTGAGAATAAGGTCTATCATCTTAAGCCCGTGAAATTTTCAGGTCCATGCCAGCCAAATACTGCTTTTATGGTGTATGGAACAATCATGGCGTGGTCTGACATGTCTGCGTATGAAGAAGATCGAAGGTTCTGGATTCAGTTCGTAGGAATCAAGAACTTCAAAGTTGATGGTGCAGGTAAAGGCACTATCGATGGCAATGGCAAGATATGGTGGCAACATTCCTGCAAAACCAACCCAAACCTCCCATGCAAGGATGCACCAACTGCTGTAACTTTCAGCCAATGCAACAACTTGTTGGTGCAAAACCTGAAATTCCAGGATCCACAGCAAATGCATATGAATTTTGATCAAAGTGTGAATGTTAGAGTTTCGAGTTTGATAGTGAAAGCCCCAGGAAACAGCCCTAATACTGATGGGATTCATGTGACAGCAACACAGAATATCTTCATAAGCAACAGTGTCATTGGCACAGGCGATGACTGCATTTCAATAGTAAGTGGGTCTAGCAATGTTATAGCTACAGACATCACCTGTGGACCAGGACATGGAATCAGTATTGGGAGTTTAGGAGCAGATGATGAAGAAGCTGAAGTGTCGAAGGTGGTCGTGGACAGAGCAACATTGATAGGAACAATGAATGGGGTGAGAATTAAGACTTGGCAGGGAGGATCTGGATATGCAAAAGGCATAAAGTTTATGAATATAGAAATGAGAAATGTGAGCAATCCCATCATCATTGATCAAAACTACTGTGATGAAAAAAAACCATGCCATCAACAGGGATCAGCTGTGCAACTGAGCGATGTGGTGTATCAGAACATAAGAGGAACAAGTGCATCAGAAGTGGCCATCAAATTTGATTGCAGCCAAACAGAGCCTTGCAGAGACATCACCGTGCAAGATGTGTTCTTGAAAACACAAGGACGTGGAGAAACAGTTGCAACTTGTGACAATGTTAGATTTGTCAACCGAGGAAACATCGTCCCTCAGTGTTCTTGA 1287 0.4336 MSPKLPLPFILLIISLISLPFCFGSHIHHNSLNAPKHEHFGLMRRSHRASKVPSSSHQATLSVDNYGAKASGNDDSEAFLKAWQEACSSGSTLVVPENKVYHLKPVKFSGPCQPNTAFMVYGTIMAWSDMSAYEEDRRFWIQFVGIKNFKVDGAGKGTIDGNGKIWWQHSCKTNPNLPCKDAPTAVTFSQCNNLLVQNLKFQDPQQMHMNFDQSVNVRVSSLIVKAPGNSPNTDGIHVTATQNIFISNSVIGTGDDCISIVSGSSNVIATDITCGPGHGISIGSLGADDEEAEVSKVVVDRATLIGTMNGVRIKTWQGGSGYAKGIKFMNIEMRNVSNPIIIDQNYCDEKKPCHQQGSAVQLSDVVYQNIRGTSASEVAIKFDCSQTEPCRDITVQDVFLKTQGRGETVATCDNVRFVNRGNIVPQCS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2828 428 FunFam Polygalacturonase QRT2 46 428 - -
Acco01g2828 428 ProSitePatterns Polygalacturonase active site. 271 284 IPR000743 GO:0004650|GO:0005975
Acco01g2828 428 SUPERFAMILY Pectin lyase-like 55 427 IPR011050 -
Acco01g2828 428 PANTHER - 58 415 - -
Acco01g2828 428 Gene3D - 44 424 IPR012334 -
Acco01g2828 428 Pfam Glycosyl hydrolases family 28 91 416 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2828 Acco-ChrAcco01 45406592 45409448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2828 9 428 Glycoside Hydrolase AT3G07970 52.968 9.28e-155 443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco08g1917 08 32650870 32651990 Acco01g2828 01 45406592 45409448 CCT
Acco01g2828 01 45406592 45409448 Acco01g2828 01 45406592 45409448 ECH