Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2826 ATGTTCGACTCTCGTTCCTGCGAACAGCAAAATAGCTCCAGCAACTGCGTTTTCTTCATTTCAGCTTCAGGGTTTTGGGCAAGAAAGAAGGGCATGGAGGCTGCGGTCGTCGATGTTGGCTCAAAGCTCCTCAAAGCGGGATTCGCTATTCCCGATCAGGCTCCAGCTATGATAATTCCTACACATATGAAACGCATGCTTGATGATGGATCAGTGAATGATAACTCATTAGTTGATGATGTTACTATCGATCCAATTGTGAGGGGGTTTGTCAGAGATTGGGATGCAATGGAAGATTTGTTGCACCATGTTTTATATACTGGCCTGGGATGGGAAATTGGCAATGAAGGGCAAATTCTATTTACAGATCCTCTTTGTACACCAAAGGCTAATAAAGAACAGTTAGTGCAACTAATGTTTGAAACATTCAACATATCAGGCTTTTATGCCTCAGAACAAGCAGTGCTATCACTATATGCTGTGGGACGTATCTCAGGATGCACAGTTGATATTGGTCATGGAAAAATAGATATTGCCCCCGTAATTGAGGGTGCTGTTCATCACATTGCCTCAAAACGATTTGAGTTTGGAGGTGTTGATTTAACCAATTTCATGGCTCAAGAACTTGGCAAGTCAAATCCGCTTGTAAGCATCAGCTTGTCTGAGGTTGAGAAAATAAAAGAGCAGTACTCCTGTTGCGCTGAAGATGAATTAGCTTATCAGAAGACCCAGGGTTCTTGTGTAGCAGAGAAACATACCCTTCCTGATGGACAGGTGATAACTATTGGGAGGGAAAGATATACTGTGGGCGAAGCTTTATTCCAACCCTCTCTATTGGGTTTAGAGACTTATGGAATCGTTGAGCAGCTTGTACGAACTATTTCAAATGTGTCATCAGATAATCATCGGCAACTGCTGGAAAATACTGTGGTTTGTGGTGGCCCTTCAACTATGACTGGTTTTGAAGAAAGGTTTCAGAAGGAAGCTAACTTGACTTCATCTGCTATTCGACCCACTCTTGTTAAGCCTCCAGAATACATGCCAGAAAATTTAACCACATATTCTGCATGGGTTGGAGGTGCCATACTTGCCAAAGTAGTTTTCCCACAAAATCAGCATGTAACTAAGGCGGACTACGACGAAACTGGACCTTCCATTGTTCACCGGAAATGTTTCTGA 1179 0.4275 MFDSRSCEQQNSSSNCVFFISASGFWARKKGMEAAVVDVGSKLLKAGFAIPDQAPAMIIPTHMKRMLDDGSVNDNSLVDDVTIDPIVRGFVRDWDAMEDLLHHVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASKRFEFGGVDLTNFMAQELGKSNPLVSISLSEVEKIKEQYSCCAEDELAYQKTQGSCVAEKHTLPDGQVITIGRERYTVGEALFQPSLLGLETYGIVEQLVRTISNVSSDNHRQLLENTVVCGGPSTMTGFEERFQKEANLTSSAIRPTLVKPPEYMPENLTTYSAWVGGAILAKVVFPQNQHVTKADYDETGPSIVHRKCF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2826 392 Gene3D - 154 355 - -
Acco01g2826 392 Gene3D - 36 386 - -
Acco01g2826 392 Pfam Actin 32 392 IPR004000 -
Acco01g2826 392 PRINTS Actin signature 131 144 IPR004000 -
Acco01g2826 392 PRINTS Actin signature 54 63 IPR004000 -
Acco01g2826 392 PRINTS Actin signature 156 175 IPR004000 -
Acco01g2826 392 PRINTS Actin signature 248 264 IPR004000 -
Acco01g2826 392 PANTHER ACTIN 35 385 IPR004000 -
Acco01g2826 392 FunFam Actin-related protein 7 35 158 - -
Acco01g2826 392 Gene3D Actin; Chain A, domain 4 196 283 - -
Acco01g2826 392 CDD NBD_sugar-kinase_HSP70_actin 35 197 - -
Acco01g2826 392 SMART actin_3 32 392 IPR004000 -
Acco01g2826 392 FunFam Actin-related protein 7 196 283 - -
Acco01g2826 392 SUPERFAMILY Actin-like ATPase domain 162 392 IPR043129 -
Acco01g2826 392 SUPERFAMILY Actin-like ATPase domain 32 169 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2826 Acco-ChrAcco01 45386187 45391960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2826 32 392 Cytoskeleton Gene Families AT5G09810 37.895 1.72e-71 227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g2826 01 45386187 45391960 Acco01g2826 01 45386187 45391960 ECH