Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2711 ATGAATGTGTCATGATCTACTACCTCTCCCTGGAAAGCTCTTTCTGAGATCCAAGTCCTTACAGATCATCACCTTAAAACTGCCCACAACTTTCTGAGAAGTGAAGCTAGGTCTGTTGTGCTGTATTATTTCTTTTCCTACCTGTTTTCGGCCTATCATGGAAACCACTACGCCCTGATATGTGCTATACCTCAAAAACTACATGCAGAGGATCAGGGGAAAATGTCTTTACAGCAGCATAATAATGTTGAGCTCAAGGGAGTTTCAGCTGTAGGGTCAGGATGTTGCCTTTATGATCTTTTGTGTGCTGAATCTCCAAATTTGCAATCCCAAAATAATCAGTGGCAGTCTTCGTCTGATCCTCTAGAAAGGTTAGAGAAGTTGATGCACGAAGCCGGGAACAATTATTGTGCTGATTGTGGGTCTCCCGAGCCAAAATGGGTATCTTCAAATATTGGAGCATTTGTTTGCATCAAGTGCTCAGGCATACACAGAAGCCTAGGAGTCCAAATATCAAAGGTTCTATCATTGAATCTAGATCAATGGACAGATGACCAAGTCACAGCACTGGAAGAGTTGGGAGGGAATGCATTGGTAAATAAAAAGTATGAAGCTTGCATCCCTGGTTATATAAAAAAGCCGAAGCCGACTTCCTCCATTGAGGAGCGTGAAAACTTTATCAGGAGAAAATATGAGTTGCTGCAATTTATGGAGTATGATGAACAATTGTCCTGCCCCTTTATCCCACATCAGAGAAGTTCCTCATGCATCATTTCTCACCAAGACAAGAAAAATTACAATAAACTAGCACACAAACATCGTATTGGGAGCACAATTCGTAACAGTTGGGTGAGAAAAGAACCTGATAATAATAATAATAAGGCTTCAAAGAAGAGCAACTCATTGGCAGGTATGGTCGAATTTGTTGGGTTGATAAAGGTTAATGTTGTCAAAGGCACTAACTTGGCTGTCCGTGATGTAATGACTAGTGATCCTTATGTCATTCTTTCTTTGGGTCACCAATCAGTAAAGACACGAGTTATAAAGAACAATTTAAATCCTGTATGGAATGAGAGCTTAATGTTGTCAATTCCACACAACATTCCTCCTCTTAAAGTGCATGTGTATGACAAAGATACATTCTCAACTGATGATTTCATGGGAGAGGCTGAAATAGACATCCAACCCTTACTCGCAGCTGCAAAAGCCTACGAGAAATCTAGAGTCAACAAGTCCATGGAGATCGAGAAATGGGTAGCAAGTTTGGACAACAACCTCGTCAAAGATGGCGTCATCTCCCTCGAAGATGGGAAGATCAGACAAGAAATATCTGTAAAGCTGCAGAATGTGGAGAGAGGGGAGCTGGAAGTTGAGCTTGAGTGTCTTCCTCTCACTCAATAG 1401 0.4133 MNVSXSTTSPWKALSEIQVLTDHHLKTAHNFLRSEARSVVLYYFFSYLFSAYHGNHYALICAIPQKLHAEDQGKMSLQQHNNVELKGVSAVGSGCCLYDLLCAESPNLQSQNNQWQSSSDPLERLEKLMHEAGNNYCADCGSPEPKWVSSNIGAFVCIKCSGIHRSLGVQISKVLSLNLDQWTDDQVTALEELGGNALVNKKYEACIPGYIKKPKPTSSIEERENFIRRKYELLQFMEYDEQLSCPFIPHQRSSSCIISHQDKKNYNKLAHKHRIGSTIRNSWVRKEPDNNNNKASKKSNSLAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPHNIPPLKVHVYDKDTFSTDDFMGEAEIDIQPLLAAAKAYEKSRVNKSMEIEKWVASLDNNLVKDGVISLEDGKIRQEISVKLQNVERGELEVELECLPLTQ 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2711 466 ProSiteProfiles ARF GTPase-activating proteins domain profile. 119 244 IPR001164 GO:0005096
Acco01g2711 466 FunFam stromal membrane-associated protein 1 isoform X1 107 242 - -
Acco01g2711 466 CDD ArfGap 125 231 - -
Acco01g2711 466 Pfam C2 domain 311 399 IPR000008 -
Acco01g2711 466 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 310 453 IPR035892 -
Acco01g2711 466 PRINTS HIV Rev interacting protein signature 134 153 IPR001164 GO:0005096
Acco01g2711 466 PRINTS HIV Rev interacting protein signature 153 170 IPR001164 GO:0005096
Acco01g2711 466 PRINTS HIV Rev interacting protein signature 174 195 IPR001164 GO:0005096
Acco01g2711 466 SMART arf_gap_3 123 244 IPR001164 GO:0005096
Acco01g2711 466 ProSiteProfiles C2 domain profile. 293 408 IPR000008 -
Acco01g2711 466 SUPERFAMILY ArfGap/RecO-like zinc finger 124 237 IPR037278 -
Acco01g2711 466 CDD C2_ArfGAP 309 453 - -
Acco01g2711 466 SMART C2_3c 311 406 IPR000008 -
Acco01g2711 466 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 116 466 IPR044518 GO:0005096|GO:0005543
Acco01g2711 466 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 308 466 - -
Acco01g2711 466 Pfam Putative GTPase activating protein for Arf 124 237 IPR001164 GO:0005096
Acco01g2711 466 Gene3D C2 domain 309 466 IPR035892 -
Acco01g2711 466 Gene3D Arf GTPase activating protein 103 244 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2711 Acco-ChrAcco01 44395482 44402599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2711 124 466 C2H2 Transcription Factor Family AT4G21160 48.105 1.02e-116 344