Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2703 ATGGACGATTCCTTCTCCGACGATAAGCTTTGTGGCTTCCTAATTGCGGTTCTCGCGGTGACTCCTTCGCAACCCGACCCGTGTGCCAGTTTAGGCTTCAAAGAGCGCTGCGACCTCTTTGGCGACCGTTCTAATGCCGTCGGATTCAGGTCCGAGAACGGCGTCGTTTTAGTTCCGGTGGATACGGCGGCAAAGCAAAATGAGGGCGGGAGCGCGTCTCCTTCTGATTCAGAGCAGTGCAAAGTGGTGGGGAGGGAATCTAGGATTGATTACGATAGCAATACTCTTATTTCGACTACGCAAAAGAAGGGCAATGCAAGAAGGAAAAATCGGATGGTATCGAGGAGTGGTAGCTTGAGGAGGAAGAGGATGACGCGGATTGGGATGGTCAATGGGAGTGTTAGCGTGATTCACCAGCTTCACGCTTTGGTTAGCAAAAAGTGCTTAAAGATTGATGCTCGAGTGATTTTGGTTGACCTTGGGGACTGTGGCGAGGCTAGAGCAGTGGTACTGGTCGATGTGTATCTTCCAATTGAATTGTGGAGTGGCTGGCAGTTTCCAAAATCCGGGTTCACTGCTGGTGCTCTTTTTCGGCATTTGAGGTGTGACTGGGATGAGAGAAGATCAGTTCTTTCTTTCTCAAACTATATTAGGAAGATTCAGGGGGCTTGTGAGAGTATTTGGAACCTTTGTGACTGTCATGTATTTGGATGCAAACTCCACTACCATGCAAGAGATTCTTCAAAGAATAGTCTATTTGAACTCCATGAGATTTTTAAGAGTATACCTGGTGTAGGAAAAGAGCGGAAGCCTGATAATTCCGGGATAGTGCCCTTGAATAACTCGCAGAGATGTGGCATTTGGGAGTTATCTGACGACATTTTAACAAAAATTCTAGCTCCCCTAAGCCCAATGGACATTGCTAGGGTTTCTGCAACTTGTCGTTATATGAGATTTTTGGCTGCTTCAATAATGCCATGTACTAAGTTAAAACTGTTTCCTCACCAGCAGACAGCTGTTGAGTGGATGTTGCATCGGGAGCGAAATGCTGAACGCTTGGCACATCCTTTGTATGTTTCTTTTTCAACAGAGGATGGTTTTGTTTTCCATATAAATATTGTATCTGGCGAAATAGTCATTGGGGAAGCCCCAACCATTAAAGATTTTTGTGGTGGAATGTTCTGTGACGAGCCTGGTTTGGGTAAGACTGTAACAACTCTATCTCTTATACTGAAGACGCAAGGTACATTGGCAGATCCACCAGATGGAGCAAATGTGGTTTGGTGTAGCCATAATGGTAATCTTAAATGTGGTTATTATGATATTGTTGGTAGTTACATAATTGACAGTAGTAATTTGGGGAAGAGGGACATATGCCAGGATGCTCGGAATAATGATAATCATGACCGCTCCTCCAAAAGAGCTAGATTGAAGATTCCTGCAGAGAAAACTAGTGGACTTAATAATAAATATTCTGGTGAAGAGAAAAAATCACCTGTAGGCGAATACTCTAAGCAGCCAATGGCTGCAAGTCGATGTTCTTGGGGCTTGAGTTGCATAAAGAAAAATCTATGTGTCACTTTTGAAGAGGAAGCTGGGCATTCCAAAGAAAGAAAAGATAGTGTAAACTCTTTGAAACTGGAACATGCATCAAGTGCTGAAACACGTATATCTGAAAAAATGCCAGTCAATACTTCATTTGGGCATGAGAGGGGTTGCGAGAGACCTGAGAAGCCTACAGTAGATTCTGTTGAGTACAATGACACTTGGATTCAGTGTGATGCTTGCCAGAAATGGAGAAAGCTTGCGGATTCCAGTATGGCTAATACTTATGCAGCATGGTTTTGTAGTATGAACACTGATCCTTTATATCAGAGTTGTAGCATCCCAGAACAACACTGGCATAATAGCTGTGAAATAACTTATTTACCAGGATTTCATGTGAAAGGTAGTGCGGGGGGTGACAAGAAGAATGTTTCATTTTTCACTGGTGTACTTAAGGAGCATTACCCAATGATAAATTCTGAGACAAAGAAAGCCCTGACTTGGTTGGCCAGACTTCCACCTGACAAGCTTTCTGAAATGGAAATAAATGGCATAAGGGGTCCAGTTTTGAGCACATGTGTTGTGTCTACTCGATATCTTAATCCATACCACAAGATATTTCAGGCATTTGGTCTCATTAAGAAGTTAGAAAAAGGTGTAAACAAGTGGTACTACCCACCAAATTTAAATAATAATTTGGCTTTTGATGTAACTGCCCTTGGCATGGCTTTGTGCGAGCCATTAGATTCATTTAGGTTATACTTGTCCAGAGCAACCCTTATAGTTGTTCCTGCTAACTTGGTTGATCACTGGAAAACTCAAATAGAAAAGCATGTCAAACACAGTCAACTGCGAGTTTATGTTTGGAATGATACTTGGAAGTGGAAGCCATCTGTGCACAGTCTGGCATGGGATTATGATGTTATCATTACTACATTTAGTCGTCTAAGTGCCGAGTGGAGCACGTGTAAGAGAAGTGTTTTGATGCATGTCCATTGGCTGAGGATCATATTAGATGAAGGGCACACTCTTGGCTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGACAGCTTCAAATCGTTGGATGCTAACAGGAACACCAACACCTAACACTCCTAAAAGTCAACTATCGCATTTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGGCTGAATCCAAAGTCATGGGAAGTTGGCATCCTTAAGCCATTTGAGGCAGAGATGGAGGAAGGAAGGTTTCGTCTCTTGCAACTACTTCGAAACTGCATGATTAGTGCGAGGAAGATGGACTTGCATAATATTCCCCCATGCATCAAAAAAGCTGTTTTTGTAGATTTTACTGAGGATCATGCCAGAAGTTATAATGAATTGGTATTAACAGTTCGTCGTAATTTATTACTGGCTGATTGGAACGATCCTTCACACATTGAGAGTCTACTGAATCCAAAGCAATGGAAATTTCGGGTTGAAACTATAAAAAACGTCAGGCTCTCGTGCTGTGTTGCTGGACATATTAAAGTTACACACACCGGTGAAGATATTCAGGAAACAATGGATATGTTAGTAGAAAGTGGTATGGATCCTGATTCAGCGGAGTATTCCTCTATAAAATATAATCTGCTTTGTGGAGGCTGGTGTGTCAGGTGCAAGGAATGGTGCCGCCTGCCCTTTATTACACCATGTCAGCATCTGCTGTGCCTTGACTGTGTCGCTTTAGACAGTACGAGGTGTACTTATCCTGGATGCAATAAATTATATGAGATGCAGAATCCAGATACACTAGCCCGCCCAGAAAATCCTAACCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAACAGGATGCTTGGGATTCTGATTGGCAATCAACATCTAGTAGCAAGGTATCCTATCTTGTCCAGAGATTGAACGCTTTACAAGAATCCAATAAGAAGAAGGGCTACTATTCTAGCAATGATCAGGTTCTCGCTGAGAGCAGTTGCCCTCTGGTGATGGGAGATGTAAAATCATCATTCCAGCAATGCCCTCCAAGCACTGAACCCAATAATATGCCTGAGAAAGTTATTATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGACTATTGCTGGTATTAAATATGCTGGGATGTATAGTCCAATGCCTTTAACCAGCAAGAAGAAGTCACTGGCTACATTCCAGCATGATCCCGGTTGTATGGCACTTGTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACACACGTGTTTTTAATGGAACCAATATGGGATAAAAGCATGGAGGAACAGGTAATTAGTCGTGCTCATCGCATGGGTGCTTGTCGTCCTATTCATGTGGAAACACTAGCAATGCGAGGTACAATTGAAGAGCAAATGCTTGAATTTTTACAGGATCCTGATAGAAGAAGAAACTCCCCTAGTGCTGTTGTCCAATCTAATGACGGTAGAAAATTCCCAACTAAAGGTGTCATCCAATTTGAAGAGGGGGTACGAGGACGTTCTTTGCATGATTTTGCTGAAAATAGTTATCTACTGAATCTTAGATTTGCGAACACCAATCCTAATGAAGGTGTCTGA 4185 0.4232 MDDSFSDDKLCGFLIAVLAVTPSQPDPCASLGFKERCDLFGDRSNAVGFRSENGVVLVPVDTAAKQNEGGSASPSDSEQCKVVGRESRIDYDSNTLISTTQKKGNARRKNRMVSRSGSLRRKRMTRIGMVNGSVSVIHQLHALVSKKCLKIDARVILVDLGDCGEARAVVLVDVYLPIELWSGWQFPKSGFTAGALFRHLRCDWDERRSVLSFSNYIRKIQGACESIWNLCDCHVFGCKLHYHARDSSKNSLFELHEIFKSIPGVGKERKPDNSGIVPLNNSQRCGIWELSDDILTKILAPLSPMDIARVSATCRYMRFLAASIMPCTKLKLFPHQQTAVEWMLHRERNAERLAHPLYVSFSTEDGFVFHINIVSGEIVIGEAPTIKDFCGGMFCDEPGLGKTVTTLSLILKTQGTLADPPDGANVVWCSHNGNLKCGYYDIVGSYIIDSSNLGKRDICQDARNNDNHDRSSKRARLKIPAEKTSGLNNKYSGEEKKSPVGEYSKQPMAASRCSWGLSCIKKNLCVTFEEEAGHSKERKDSVNSLKLEHASSAETRISEKMPVNTSFGHERGCERPEKPTVDSVEYNDTWIQCDACQKWRKLADSSMANTYAAWFCSMNTDPLYQSCSIPEQHWHNSCEITYLPGFHVKGSAGGDKKNVSFFTGVLKEHYPMINSETKKALTWLARLPPDKLSEMEINGIRGPVLSTCVVSTRYLNPYHKIFQAFGLIKKLEKGVNKWYYPPNLNNNLAFDVTALGMALCEPLDSFRLYLSRATLIVVPANLVDHWKTQIEKHVKHSQLRVYVWNDTWKWKPSVHSLAWDYDVIITTFSRLSAEWSTCKRSVLMHVHWLRIILDEGHTLGSSLNLTNKLQMAISLTASNRWMLTGTPTPNTPKSQLSHLQPLLRFLHEEAYGLNPKSWEVGILKPFEAEMEEGRFRLLQLLRNCMISARKMDLHNIPPCIKKAVFVDFTEDHARSYNELVLTVRRNLLLADWNDPSHIESLLNPKQWKFRVETIKNVRLSCCVAGHIKVTHTGEDIQETMDMLVESGMDPDSAEYSSIKYNLLCGGWCVRCKEWCRLPFITPCQHLLCLDCVALDSTRCTYPGCNKLYEMQNPDTLARPENPNPKWPVPKDLIELQPSYKQDAWDSDWQSTSSSKVSYLVQRLNALQESNKKKGYYSSNDQVLAESSCPLVMGDVKSSFQQCPPSTEPNNMPEKVIIFSQFLEHIHVIEQQLTIAGIKYAGMYSPMPLTSKKKSLATFQHDPGCMALVMDGSAALGLDLSFVTHVFLMEPIWDKSMEEQVISRAHRMGACRPIHVETLAMRGTIEEQMLEFLQDPDRRRNSPSAVVQSNDGRKFPTKGVIQFEEGVRGRSLHDFAENSYLLNLRFANTNPNEGV 1394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2703 1394 Pfam CW-type Zinc Finger 589 632 IPR011124 GO:0008270
Acco01g2703 1394 SMART ultradead3 328 919 IPR014001 -
Acco01g2703 1394 MobiDBLite consensus disorder prediction 462 480 - -
Acco01g2703 1394 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1194 1352 IPR001650 -
Acco01g2703 1394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 847 1334 IPR027417 -
Acco01g2703 1394 ProSiteProfiles Zinc finger CW-type profile. 584 635 IPR011124 GO:0008270
Acco01g2703 1394 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 82 1334 - -
Acco01g2703 1394 CDD SF2_C_SNF 1213 1318 - -
Acco01g2703 1394 MobiDBLite consensus disorder prediction 104 119 - -
Acco01g2703 1394 Pfam Helicase conserved C-terminal domain 1210 1308 IPR001650 -
Acco01g2703 1394 CDD F-box_SF 289 321 - -
Acco01g2703 1394 Gene3D - 581 635 - -
Acco01g2703 1394 SUPERFAMILY F-box domain 281 323 IPR036047 GO:0005515
Acco01g2703 1394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 771 945 IPR027417 -
Acco01g2703 1394 Pfam SNF2-related domain 335 990 IPR000330 GO:0005524|GO:0140658
Acco01g2703 1394 CDD DEXDc_SHPRH-like 762 946 - -
Acco01g2703 1394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 413 IPR027417 -
Acco01g2703 1394 ProSitePatterns Zinc finger RING-type signature. 1083 1092 IPR017907 -
Acco01g2703 1394 SMART helicmild6 1226 1308 IPR001650 -
Acco01g2703 1394 Gene3D - 754 949 IPR038718 -
Acco01g2703 1394 MobiDBLite consensus disorder prediction 462 503 - -
Acco01g2703 1394 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 738 905 IPR014001 -
Acco01g2703 1394 Gene3D - 1104 1363 IPR027417 -
Acco01g2703 1394 MobiDBLite consensus disorder prediction 100 119 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2703 331 411 RAD5 or RAD16-like Gene Family AT5G22750 32.955 2.75e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Acco01g2703 SNF2_N 2.2e-94 CL0023