Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2643 ATGTCCCCCGCCTACCCGTCAGTCTCCGCCACCGGCACTGGCCTCGGCTATGGCATCGCCATCGCGGTCAGCATCCTCGTCCTCATTTCCAGCATCATGCTCGCCTTTTATGCTTGTGTCCGGATAAAGGCCAACGGCCGCGGCCTTAACCGCCGTGTCAGTAGTAGTAGTAGCAGCAGTAATAACTCCGACGAGCCGGTGGTGGTTGTTTTGGGCCTGGATAAGCCTACCATCGAAGCCTTCCCGAAGATTGTGTTAGGGGAGAGTCGGCGATTGCCCAGACCCAATGGAGGCCCATGCGCTATTTGCTTGGGAGAGTATGTGAAGAATGATACGGTGCGGTGCGTTCCAGAGTGCAACCACTGTTTCCACGTGAAATGCTTGGATGAGTGGCTTCGTCTGAGTGCCACGTGTCCTCTGTGTCGGAACTCTCCTGCTCCGTCGCCGGGGCCGACGCCGGTTGTCACTCCTCTGTCTGAATTGGTTCCACTTGCTTCGTACGCGAGGTGA 510 0.5745 MSPAYPSVSATGTGLGYGIAIAVSILVLISSIMLAFYACVRIKANGRGLNRRVSSSSSSSNNSDEPVVVVLGLDKPTIEAFPKIVLGESRRLPRPNGGPCAICLGEYVKNDTVRCVPECNHCFHVKCLDEWLRLSATCPLCRNSPAPSPGPTPVVTPLSELVPLASYAR 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2643 169 SMART ring_2 100 141 IPR001841 -
Acco01g2643 169 CDD RING-H2_EL5-like 100 142 - -
Acco01g2643 169 SUPERFAMILY RING/U-box 99 150 - -
Acco01g2643 169 Pfam Ring finger domain 100 142 IPR001841 -
Acco01g2643 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 147 IPR013083 -
Acco01g2643 169 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Acco01g2643 169 PANTHER RING-H2 FINGER PROTEIN ATL67 10 168 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2643 Acco-ChrAcco01 43581517 43582026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2643 1 169 C3H Transcription Factor Family AT5G07040 61.047 3.47e-64 192