LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco01g2622	ATGTCCTTAGAGCCTCAGAGAGCAGTGGTGATCCAGGATGCTTCAAGAGATGCTTGTAGAGGTGCAATAAAAAGGGTTCTGAAACAGCTATCTCTAAAACCTGGAGATGAGCTCACAATTTTTGCTATATTCGGGAACAAGATCGTCAAGATGGATTCAACATCATTTATTGCAACAGATCGGAGAATTCTTCGAGAGGAACTTAGCAAGATAAAGGAAGAATATCATAAGAGACCACGAGTCATGAAACTTTCTGACTATTGTAAAGCAAAAAATATTAATTTCCAGATAGAAGTGCTTGCATACTCTTCTCCAGAGGTTACTTGTCGTGCTGTCAATATATATAGGGCAACATACTTGGTACTTAACAGACACATGAACAAAGATAAGAGGCACTTCATGGACAATCTCGCTTGTGGTATTTATTGGATAAGGAATCGCTATAGAATTCAAATGATAAGAAAGCCAAACCTAATGGAGAACAGCAAATCATGTGCTAAAAGATCATATTATGTGAAGACTAGGGAAGTGATACCAGGAAGCTCAGAGGAACAATTTTCTCGTAAGGGAAAAAGATCATTATCAAGTGAGCATTTCATGGAAACCGGAGTTTCAAGTCCTCAAAATTCCAAAGCCCTGACTTCCAGTCATTCTCTAAAATACCAAGAGGAAGAAAATTTTCCAAAGGCTAAACACCAAACATCAGTACTCAACATTTCTGAGAGTAAAGAGATAGGCCAAACAGAATCACCTCAATTTGAGATGAAAGAAGGGCTCACAAACCCACTATGTTCAGTGTGCAAGAACAAAAGACCAAAAGCTGGATGGATAAGAGACTTCAGTTACTCTGAGCTTTACACAGCCACAAAGGGATTTTCCCAGAAGAATTTTCTATCAGAAGGTGGGTTTGGATTAGTATACAAAGGGCAGTTAGATGGAATGGAAATTGCTGTTAAGCAACACAAATGTGGTAGCCTGCAAGGGGAGAAGGAGTTTAAGTCAGAAGTCAATCTATTAAGCAAAGCAAGACATGAGAATGTAATCATGCTGTTGGGGTCATGCTCTGAAGGAAACAATAGGTTTCTTGTTTATGAATTCGTATGCAATGGCTCGCTGGATCAACACCTATCTGAACATTCTCGAACTCCACTTAGATGGGAAGATAGGATTAAGGTAGCTATTGGATCCGCTAAAGGCTTATTATACTTGCACGAGAATAACATCATACACAGAGATATTAGAACAAACAATATCCTCTTAACACATGATTATCAACCACTGCTGGGAGACTTTGGTTTGGCAAGAAGTCATCATGAAAACTCAATCCAATCAACAGAGGTTGTTGGGAGTTTGGGATATTTGGCTCCAGAATATGCGGAATATGGCAAAGTGTCGACTAAAATAGATGTTTATTCTCTAGGGGTAGTCCTATTGCAGCTAATAACTGGAATGAGGATTACAGACCAAAGACTTGAAGGCAAAAGTCTTGTCGGATGGGCAAGACCACTATTAAGAAAGAGGAATTATCCAGATCTAATTGATGAAAGGATCATGAATTCTCACGATTACCATCAATTATTTTGGATGGTTCGAATTGCAGAGAAATGTCTAAGTAGGGACCCTCACAAGAGACTAAACATGGGTGAGGTGATTGTTGCTTTAACTCACTTAGCGAAAGGCGAGATATGCGGGAACATAAACACAGATTTCTTCCCAGTAAGATCAGATTCATTTTACAGCTCATCAGACGAAAGCGAAGAATCATCAGAAGATGAAATAATGAACGATGCAGAAGATGAGTCAGAAAGTGGCGGTACAGATTCCCTTAGCAACGTGAGCCATATGGATTTGGGGCTCCCTGACCCTCCATCGCCTCCTCTAATAACGGATGCCACATCATTTAGCAGGTCGATTACAGTTAAAGAGCATGACCAGCCAACTATGAACACCCAAGTGGATGGTGTAATTCCAATGGATATAATCGAAGAAATGGAGGCGTAG	2001	0.3993	MSLEPQRAVVIQDASRDACRGAIKRVLKQLSLKPGDELTIFAIFGNKIVKMDSTSFIATDRRILREELSKIKEEYHKRPRVMKLSDYCKAKNINFQIEVLAYSSPEVTCRAVNIYRATYLVLNRHMNKDKRHFMDNLACGIYWIRNRYRIQMIRKPNLMENSKSCAKRSYYVKTREVIPGSSEEQFSRKGKRSLSSEHFMETGVSSPQNSKALTSSHSLKYQEEENFPKAKHQTSVLNISESKEIGQTESPQFEMKEGLTNPLCSVCKNKRPKAGWIRDFSYSELYTATKGFSQKNFLSEGGFGLVYKGQLDGMEIAVKQHKCGSLQGEKEFKSEVNLLSKARHENVIMLLGSCSEGNNRFLVYEFVCNGSLDQHLSEHSRTPLRWEDRIKVAIGSAKGLLYLHENNIIHRDIRTNNILLTHDYQPLLGDFGLARSHHENSIQSTEVVGSLGYLAPEYAEYGKVSTKIDVYSLGVVLLQLITGMRITDQRLEGKSLVGWARPLLRKRNYPDLIDERIMNSHDYHQLFWMVRIAEKCLSRDPHKRLNMGEVIVALTHLAKGEICGNINTDFFPVRSDSFYSSSDESEESSEDEIMNDAEDESESGGTDSLSNVSHMDLGLPDPPSPPLITDATSFSRSITVKEHDQPTMNTQVDGVIPMDIIEEMEA	666

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco01g2622	666	Pfam	Protein tyrosine and serine/threonine kinase	295	551	IPR001245	GO:0004672\|GO:0006468
	Acco01g2622	666	Gene3D	Transferase(Phosphotransferase) domain 1	367	567	-	-
	Acco01g2622	666	MobiDBLite	consensus disorder prediction	198	216	-	-
	Acco01g2622	666	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	408	420	IPR008266	GO:0004672\|GO:0006468
	Acco01g2622	666	SMART	tyrkin_6	292	554	IPR020635	GO:0004713\|GO:0006468
	Acco01g2622	666	PANTHER	OS01G0253100 PROTEIN	201	559	-	-
	Acco01g2622	666	MobiDBLite	consensus disorder prediction	583	603	-	-
	Acco01g2622	666	FunFam	Proline-rich receptor-like protein kinase PERK8	254	366	-	-
	Acco01g2622	666	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1	367	569	-	-
	Acco01g2622	666	ProSiteProfiles	Protein kinase domain profile.	292	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco01g2622	666	MobiDBLite	consensus disorder prediction	182	216	-	-
	Acco01g2622	666	SUPERFAMILY	Protein kinase-like (PK-like)	276	561	IPR011009	-
	Acco01g2622	666	Gene3D	Phosphorylase Kinase; domain 1	265	366	-	-
	Acco01g2622	666	MobiDBLite	consensus disorder prediction	577	631	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco01g2622	Acco-ChrAcco01	43384404	43391272	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco01g2622	280	580	Trihelix Transcription Factor Family	AT5G38560	45.860	4.44e-78	261

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-2	Acco01g2622		PK_Tyr_Ser-Thr	2.7e-45	CL0016