Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2621 ATGAATCAGACAAGCATACCAGAACAACAAAGCAGCAACAAAAGCGAACACGAACACGAAGGATGTGATGAGGAGACAAGAGAGGAATTCAAGAACTATATTTGTGGAGGGTGCAAGAACAAGAGGCCAAGATCAATAGTTAGTAATAATAAGAGGGAATTCACATATGCAGAATTGAATGTTGCGACAGATGGATTTTCTATGAAGAACTTTCTATCAGAAGGAGGATGTGGCAAAGTGTATAAAGGGGAGCTTCATGATGGGATGAAGATAGCTGTGAAGAAACAACACAAATGTGCTAGCCTGCAAGGGGAGAAGGAGTTTGAGTCAGAAGTCAATCTATTAAGCAAAGCAAGACATGAGAATGTAATCATGCTGTTGGGGTCATGCTCTGAAGGAAACAATAGGTTTCTTGTTTATGAATTCGTATGCAATGGTTCGCTGGATCAACACCTATCTGAACATTCTCGAACTCCACTTAGATGGGAAGATAGGATTAAAGTAGCTACTGGATCCGCTAAAGGCTTATTATACTTGCATGAGAATAACATCATACACAGAGATATTAGAACAAACAATATCCTCTTAACACATGATTATCAACCACTGCTGGGAGACTTTGGTTTCGCAAGAAGTCAACATGAAAACTCAATCCAATCAACAGAGGTTGTTGGGAGTTTTGGATATTTGGCTCCAGAATATGCAGAATATGGCAAAGTGTCAACTAAAATAGATGTTTATTCTCTAGGGGTAGTCCTATTGCAGCTACTAACTGGAATGAGGATTACAGACCAAAGACTTGGAGGCAAAAGTCTTGTCGGATGGGCAAGACCACTATTAAGAGAGAGGAATTATCCATATCTAATTGATGAAAGGATCATGAATTCTCATGATTACCATCAACTATTTTGGATGGTTCGAATTGCAGAGAAATGTCTAAGTAGGGACCCTCACAAGAGACTAAACATGGGTGAGGTGGTTGCTGCTTTAACTCACTTAGCGAAAGGCGAGATATGCGGGAACATAAACACAGATTTCTTCCCTGTGCGATCAGATTCATTTTACAGCTCATCAGACGAAAGCGAAGAATCATCAGAAGATGAAATAATGAACGATGCAGAAGATGAGTCAGAAAGTGGCGGCACAGATTCCCTTAGCAACGTGAGCCATATGGATTTGGGGCTCCCTGACCCTCCATCGCCTCCTCTAATAACGGATGCCACTTCATTTAGCAGGTCGATTACAGTTAAAAAGCATGACCAGCCAACTACGAACACCCAAGTGGATGGTGTAATTCGAATGGAAATAGTCGAAGAAATGGAGGCGTAG 1329 0.4108 MNQTSIPEQQSSNKSEHEHEGCDEETREEFKNYICGGCKNKRPRSIVSNNKREFTYAELNVATDGFSMKNFLSEGGCGKVYKGELHDGMKIAVKKQHKCASLQGEKEFESEVNLLSKARHENVIMLLGSCSEGNNRFLVYEFVCNGSLDQHLSEHSRTPLRWEDRIKVATGSAKGLLYLHENNIIHRDIRTNNILLTHDYQPLLGDFGFARSQHENSIQSTEVVGSFGYLAPEYAEYGKVSTKIDVYSLGVVLLQLLTGMRITDQRLGGKSLVGWARPLLRERNYPYLIDERIMNSHDYHQLFWMVRIAEKCLSRDPHKRLNMGEVVAALTHLAKGEICGNINTDFFPVRSDSFYSSSDESEESSEDEIMNDAEDESESGGTDSLSNVSHMDLGLPDPPSPPLITDATSFSRSITVKKHDQPTTNTQVDGVIRMEIVEEMEA 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2621 442 Gene3D Transferase(Phosphotransferase) domain 1 143 343 - -
Acco01g2621 442 PANTHER OS01G0253100 PROTEIN 18 335 - -
Acco01g2621 442 MobiDBLite consensus disorder prediction 1 23 - -
Acco01g2621 442 ProSitePatterns Tyrosine protein kinases specific active-site signature. 184 196 IPR008266 GO:0004672|GO:0006468
Acco01g2621 442 SMART tyrkin_6 66 330 IPR020635 GO:0004713|GO:0006468
Acco01g2621 442 MobiDBLite consensus disorder prediction 359 379 - -
Acco01g2621 442 MobiDBLite consensus disorder prediction 353 408 - -
Acco01g2621 442 Pfam Protein tyrosine and serine/threonine kinase 68 329 IPR001245 GO:0004672|GO:0006468
Acco01g2621 442 FunFam Proline-rich receptor-like protein kinase PERK8 25 142 - -
Acco01g2621 442 ProSiteProfiles Protein kinase domain profile. 66 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g2621 442 Gene3D Phosphorylase Kinase; domain 1 34 142 - -
Acco01g2621 442 SUPERFAMILY Protein kinase-like (PK-like) 51 340 IPR011009 -
Acco01g2621 442 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 143 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2621 Acco-ChrAcco01 43372650 43376493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2621 46 362 Trihelix Transcription Factor Family AT5G38560 43.465 8.42e-79 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Acco01g2621 PK_Tyr_Ser-Thr 1.2e-45 CL0016