Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2619 ATGGTGCATGACACTGACGATGGAGAGCTCCCCAATGAGCAGAATGGGCCACAGTTGAATGATGAGAGCAATGGAGGAAGTGCCAGTGGAGTTATGCTGAAGAAAGGTCCGTGGACATCTGCTGAAGATGCTATTCTGGTGGACTATGTTAAGAAGCATGGGGAAGGGAACTGGAATGCTGTTCAGAAGCACTCAGGCCTGTCCCGATGTGGCAAAAGCTGCCGACTGAGGTGGGCAAATCACCTAAGGCCAAATTTAAAGAAAGGAGCTTTTACTGCAGAAGAAGAGTGGTTGATTGCTGAACTCCATGCCAAGATAGGAAACAAATGGGCACGCATGGCTGCACATCTGCCTGGTCGGACTGATAATGAGATAAAGAACTACTGGAATACTCGTGTAAAGAGGCGTCAGCGGGCTGGCTTGCCTCTATATCCTCCTGAAGTGTGTTCACAAGAATCGAAGGATAGTCAACAAGGCCGAAGCACTGCTGGAAAAATTGGAGATAGAGGGCATACTGGTTTCCTGGTGGAAAATAGTTATCAGAAACATGATATTCTATTTGACAGTCTGAATGCAAATCAGGGAGCCTTTCCTTATGTACCGGATATTCCTGATATTTCTGCCAATAACATTCTGCTGAAAGGTCTCGGTTCTTCCCAGCATTGTAATTATTTGCCATCAACATTACCTTACCACAAGCGATTTCATGATTCAACAATGCCATTTCTTAGTTCATCTGAGGTGACCAGAAATGGGTTTTATCCTTTACATCATATTCAGGATTATACTTATGATAAGATTGCACAATCATTTGGATACTATTCTCCCTTTAATCCTGGTCCCTCCTCACAGAACTCACTGTGTTATAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTTTGAGGCTGTGAAGCTGGAGCTCCCTTCACTCCAATATCCAGAAACTGATTTAGGCAGCTGGGGTACATCTCCTCCGCCTCCTTTGCTAGACTCAGTTGATGTTCTCACTGGTACCCCCCTGCCAACTAGTTTACTGGAGTCAGATTCTTCTTCACCCTATAATAGTGGCCTCCTGGACGCTTTACTTCATCAGTCCAAGAATCTGAGCAATTCAAATAACCATTGTTCTGACAAGAGTTCAAATTCATCTACTGCTACCCCTGGTGATAGAGCCGACAGCTCCACTTTGTACGTGTATGAGCCAGAATGTGAAGATTATGCAGACTGTGTTTCTCCATTTGGTGCAACTTCGATGTTGAATGAATGTCTTGCTGTTGGTGCCAACAGAAACTCATTTGATGAACTGCAACCCGCACAGACCTTAAATGAAAACGCTCTGAAAGCGGAATCTGCTTACCAGGCTTTGACCCCCAACAGTGAAGATCAAGGCATGTCGATGTGGGATATGCCCCAACCAGATGTTTTGCTTGATTCAGATTGGTATGAGCTAGGCCCTGCATTTACCAAGAACCAGGTTGACATAAACAATTCCAGAGCAACCCTCGTCGGTGGTGATGATTTTGCCTCTGACTTCAAGTACATATCTGACGATATCTCATCTAGTCAAGTATGGGGTTTGGATTCTTGCACTTGGAATAACATGCCTGCTGTTTGCCAAATGTCTGATCTTCCGTAA 1650 0.4461 MVHDTDDGELPNEQNGPQLNDESNGGSASGVMLKKGPWTSAEDAILVDYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEWLIAELHAKIGNKWARMAAHLPGRTDNEIKNYWNTRVKRRQRAGLPLYPPEVCSQESKDSQQGRSTAGKIGDRGHTGFLVENSYQKHDILFDSLNANQGAFPYVPDIPDISANNILLKGLGSSQHCNYLPSTLPYHKRFHDSTMPFLSSSEVTRNGFYPLHHIQDYTYDKIAQSFGYYSPFNPGPSSQNSLCYSHSLSNGNSSTSKPTFEAVKLELPSLQYPETDLGSWGTSPPPPLLDSVDVLTGTPLPTSLLESDSSSPYNSGLLDALLHQSKNLSNSNNHCSDKSSNSSTATPGDRADSSTLYVYEPECEDYADCVSPFGATSMLNECLAVGANRNSFDELQPAQTLNENALKAESAYQALTPNSEDQGMSMWDMPQPDVLLDSDWYELGPAFTKNQVDINNSRATLVGGDDFASDFKYISDDISSSQVWGLDSCTWNNMPAVCQMSDLP 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2619 549 Gene3D - 90 136 - -
Acco01g2619 549 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 86 IPR017930 -
Acco01g2619 549 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Acco01g2619 549 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 20 504 - -
Acco01g2619 549 FunFam MYB-related transcription factor 34 87 - -
Acco01g2619 549 MobiDBLite consensus disorder prediction 374 397 - -
Acco01g2619 549 MobiDBLite consensus disorder prediction 1 34 - -
Acco01g2619 549 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Acco01g2619 549 Gene3D - 34 87 - -
Acco01g2619 549 SMART sant 34 84 IPR001005 -
Acco01g2619 549 SMART sant 87 135 IPR001005 -
Acco01g2619 549 MobiDBLite consensus disorder prediction 374 396 - -
Acco01g2619 549 MobiDBLite consensus disorder prediction 11 27 - -
Acco01g2619 549 MobiDBLite consensus disorder prediction 144 170 - -
Acco01g2619 549 FunFam Transcription factor GAMYB 90 136 - -
Acco01g2619 549 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Acco01g2619 549 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 137 IPR017930 -
Acco01g2619 549 MobiDBLite consensus disorder prediction 320 340 - -
Acco01g2619 549 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Acco01g2619 549 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Acco01g2619 549 CDD SANT 37 82 IPR001005 -
Acco01g2619 549 CDD SANT 90 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2619 Acco-ChrAcco01 43350144 43353073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2619 4 542 MYB Transcription Factor Family AT3G11440 41.355 5.08e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco01g2619 Myb_DNA-binding 5.1e-15 CL0123