Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2584 ATGGATGCTAAGGTACTGCTGAAAATCATCAGGCTGAAAGCTGTTCTCATCATGGACATAGATCTAAGGTTACCTTCTGGCGACCACGATAAGGATGAAGAACAAAATTCTATTGGGGACATATTGGAGGATGAAGAAAAATTTCATCCTGGAGATCTAGAAGGGCAGAATATGGTTGGTGCTAGTGTTGATGTACATGCTCTAGATAGTGGAGATTTGAATTCAACGACAGTGGGTATGACAATATTTAAAGAAGATACAAATCTTGAGCCCCTTTCTGGCATGGAATTTGAGTCTCATGGGGAAGCTTATTCTTTCTACCAAGAATATGCAAGGTCAATGGGATTCAGCACTGCAATACAAAATAGTCGCCGTTCAAAAACATCAAGAGAATTTATAGATGCAAAATTTGCTTGTTCCAGGTATGGAACAAAAAGAGAGCATGACAAATCATTCAATCGACCCCGTGCCAGACAGAACAAGCAAGATGCTGAAAATTCAACTGGTCGAAGATCTTGTTCAAAGACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGCCTGATGGAAAATGGGTAATACATAGTTTTGTGAAGGAGCATAATCATGAGCTTTTACCAGCTCAAGCTGTCAGTGAGCAAACAAGAAAAATGTATGCTGCAATGGCTAGACAGTTCGCTGAATACAAAACTGTGGTTGGTCTCAAGAATGAGAAAAGTCCATTTGACAAAGGCCGGAATTTGGGCCTAGAGTCAGGGGATGCCAAGCATCTACTTGATTTTATGGTGCAGATGCATAGTATGAATTCTAACTTCTTTTATGCAGTAGATATTGGTGAGGATCTACGTCTGAAAAATCTTTTATGGATTGACGCTAAAAGTAGGCATGACTATATGAACTTCTGTGATGTAGTTTCTTTTGACACCTTCTATGTTAGAAACAAATATAAGTTACCTCTTGCGCTTTTTGTTGGAGTAAATCAGCACTATCAATTTATGCTGCTGGGGTGTGCCTTAATATCAGATGAAAGTGCTGCTACTTATTCTTGGCTAATGCGGACATGGCTGAAAGCAGTTGGTGGCCAAGCTCCAAAAGTGATCATCATTGACCATGACAATACATTGAAGTCAGTTATTTTAGATGTTTTTCCTAATGCTCATCACTCCATGTGCTTATGGCATGTATTAGGGAAGGTGTCTGAAAATCTGGCTCATGTAATCAAGCGACATGAGAATTTTATGGCAAAATTTGAAAAATGCATCTATAGGTCATGGACAAACGATGAGTTTGAGAAGAGGTGGTCGAAAATTGTTGATAGGTTTGAGCTCCGAGAGGATGAATGCATGCAGTCATTGTATGAAGATTGCAAGTTGTGGGTGCCAACATTCATGAAGGATATTTTCTTAGGTGGTTTGTCCACTGTCCTGCGATCAGAAAGTGTGAATTCCTTCTTTGATAAATATGTTCATAAGAAGACCTCTGTGCAAGATTTTGTCAAGCAGTATGAAGCAATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGGTGATTCTGAGACATGGAATAAAGTGGCGACATTAAAAACTCCTTCCCCGTTGGAGAAGAGTGTTGCAGGGAGTTACACTCATGCATTGTTCAGGAAGATTCAAGTTGAGGTTATTGGTGCAGTTGCTTGTCATCCTAAAGCTGAAAGACATGATGATGCAGGCATTAGTTACAAGGTTCATGATATGGAAAAGAATCAAGACTTCATTGTTGTGTGGAATGAAATTAAATCTGAAGTTTCATGCATTTGTCGGTTATTTGAATATAGAGGTTTTCTTTGTCGACATGCATTGATTGTTCTTCAATATTCTGGGCTTTCGGTAATACCACCTCAATATATCTTGAAACGGTGGACAAGAAATGCAAAAAATGGACAAATGATGGGAGAAGAATCAGAACATATGCTGGCTAGGGTACAACGATACAATGATTTATGTCAGCGAGCAATGAAGTTGAGTGAAGAGGGATCTCTATCTCAAGACAGTTATAGTATTGCAGTCCATGCATTACGTGAAGCACACAAAAGTTGTGTGAGTGCCAACATTTCTAGCAAGAGTCCTGCCGAAGCTGTCATATCAGCTAGTCAGAGTCAGCTCTCTACTGAAGAAGACACCCTAAGTAGAAATATAGGCAAGTCAAACAAAAAGAAGAATCCGACTAAGAAGAAAAAGCTGAACTCCGAGCCTGAAGTCATGACTGTTGGGGCACAAGATAACATGCAGCAAATGGAGAAATTCAATGCAAGGACAGTAACCCTTGATGGTTATTATGGTTCTCAACAGAGTGTTCAGGGAATGTTGAACTTGATGGGACCAACACGCGATAATTATTATGGGAATCAACAGACAATTCAGGGGCTGGGACAATTAAGTTCCATACCAACGAGCCACGATGGTTACTATGCTCATCAAAGCATGCCTGGTCTGGCACAGCTTGATTTTTTCCGGACAAATTTCACTTATGGCATTCGGGATGATCAAAACGTAAGACCGACACAATTGCATGAGGATCCATCAAGACATGCATGA 2574 0.3998 MDAKVLLKIIRLKAVLIMDIDLRLPSGDHDKDEEQNSIGDILEDEEKFHPGDLEGQNMVGASVDVHALDSGDLNSTTVGMTIFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFSTAIQNSRRSKTSREFIDAKFACSRYGTKREHDKSFNRPRARQNKQDAENSTGRRSCSKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKTVVGLKNEKSPFDKGRNLGLESGDAKHLLDFMVQMHSMNSNFFYAVDIGEDLRLKNLLWIDAKSRHDYMNFCDVVSFDTFYVRNKYKLPLALFVGVNQHYQFMLLGCALISDESAATYSWLMRTWLKAVGGQAPKVIIIDHDNTLKSVILDVFPNAHHSMCLWHVLGKVSENLAHVIKRHENFMAKFEKCIYRSWTNDEFEKRWSKIVDRFELREDECMQSLYEDCKLWVPTFMKDIFLGGLSTVLRSESVNSFFDKYVHKKTSVQDFVKQYEAILQDRYEEEAKGDSETWNKVATLKTPSPLEKSVAGSYTHALFRKIQVEVIGAVACHPKAERHDDAGISYKVHDMEKNQDFIVVWNEIKSEVSCICRLFEYRGFLCRHALIVLQYSGLSVIPPQYILKRWTRNAKNGQMMGEESEHMLARVQRYNDLCQRAMKLSEEGSLSQDSYSIAVHALREAHKSCVSANISSKSPAEAVISASQSQLSTEEDTLSRNIGKSNKKKNPTKKKKLNSEPEVMTVGAQDNMQQMEKFNARTVTLDGYYGSQQSVQGMLNLMGPTRDNYYGNQQTIQGLGQLSSIPTSHDGYYAHQSMPGLAQLDFFRTNFTYGIRDDQNVRPTQLHEDPSRHA 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2584 857 Pfam SWIM zinc finger 589 618 IPR007527 GO:0008270
Acco01g2584 857 MobiDBLite consensus disorder prediction 708 722 - -
Acco01g2584 857 MobiDBLite consensus disorder prediction 708 744 - -
Acco01g2584 857 Pfam FAR1 DNA-binding domain 105 207 IPR004330 -
Acco01g2584 857 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 85 693 IPR031052 GO:0006355
Acco01g2584 857 MobiDBLite consensus disorder prediction 146 180 - -
Acco01g2584 857 Pfam MULE transposase domain 304 396 IPR018289 -
Acco01g2584 857 SMART 26again6 595 622 IPR006564 GO:0008270
Acco01g2584 857 ProSiteProfiles Zinc finger SWIM-type profile. 573 620 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2584 Acco-ChrAcco01 42920091 42925129 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Acco01g2584 FAR1 3.3e-28 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g2584 01 42920091 42925129 Acco08g1767 08 27728361 27732171 CCT