Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2556 ATGATGGACAGTGTTCGTGGCAAAGGAGATGAATTAAAGAAGTCTCCATCTCTGCATTCCACATCTTCAGCTGTCGCTGTAGCTATCAAAGGTAACAAGAAAAGCAAGCATATGGTGCAATGGGCACTGGATACTTTTGTTCCTGAGGGAAGAATTGTGTTTAAGCTGATACATGTCCATTCAGAAGCTGCTTTTAAGAAGGAAACGGAGTGGAAGACAAGTGTAATGCTCCTACCTTACAAGAAAATGTGTGAGCAGAGAAAGGTTCATGTTGATATTGTAGTGATTCAATCTGATGATGTAGAAACTGCAATAGCAGATGAAGTTGCCAAGAGTTCTATAACCAACCTGGTTATAGGGGCTTCATCTCATGCCATATTTACTAGTAAACTGAAGGGTTTATCTGCGAAAATCTCATCATGCACTCCAAGATTTTGTACAGTGTATGCTGTTTCCAAAGGGAAGCTGTTTTCTTCACGGCCATCAGACATGGAGATTCATGAAAGCTTAATTGATGACAGCAGTGAAACCAGTTGTTCAACCAATAGCTCATTGAACTCTGCGTCCACCTCTCAGATAGACTATGGTTCAGTTAGATCATACACTCCCATAAATTCCTCTTCCCTAGCGGCACAGAGATATCAAGCTCTTTCAGCCATTAATCAGACCCGTCAGAGCACCAAAGCTGGTTTAATTGAAAATAACCACTCTAGAAGCCATTCTCTAGATCTTGGCATAGAGCAAACTGCTATTTATTCTTCTACAAGAAACTCAGATATTGACTATGCTTTGACCCGGGTCTCGAGCTGCAAAAGCAATCTATCAGATGGTGAATCTTGGAATTATTATCAAAATCCCACCATGGATGTATCGCCAGCTACTGTGTCACCTGATAAACAGGAAAGTTTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAAGCATGCCCAAGGAATGCACATGGTAGCTCAAAGACAGAATATTGATGCATCACAAATGTTGAACAATCTTAGTAAGAAGAGAATGGAGGAATCCGTGAAATTGAAGGAAATTATTGCTAAGGAAGGCATGGCCAAAAAATTAGTAATGAAGGAGAGAGAGAAATGTGAAGCAGCTGAAAGAGAAGCTGCTTATTTGAAAAGAAGTTCCGAAGAGGAAGCCTTTGAAAGAAAAGAAGCAGAGATGAAAGCTGTGGAAGCTGCTGAAAGGAATGAAAAGCTAGAGGATGCTCTCAATGGTTCCATGCTTCAGTATAAGAAGTTTACATGGGATGAAATAGTTTCAGCTACCTCATCATTCTCTGAAGAGCTTAGAATTGGAAAGGGAGCTTGTGGAACAGTTTATAGGTGCGATTTGTATCATACACCTGTGGCAGTAAAGATTCTTTGCTCTACTGAGGACCACATTATCAAGCAACTCCAACAAGAGCTAGAAATACTGAGCAGAGTTCGTCATCCAAATTTACTTCTCCTTCTCGGGGCATGCTCCGATCATGGATGCCTTGTGTATGAATACATGGAGAATGGTAGCTTAGAGGACACTTTACTCCAAAATAAAAGTAATATCTCAATTCCATGGTTCAAGAGGTACCAAATTGCATGGGAAGTAGCCTCTGTTCTTGCCTTTCTTCATAGCTCAAAGCCCAGACCCATCATCCATCGTGATTTGAAACCGGCAAACATCTTGCTAGATGGGAATCTCGTGAGCAAGGTTGGCGATATAGGCCTCTCTACATTACTCCATTCAGATACTCTGTCTACAATGTTCAAGGACACAGAGCCTGTTGGGACACTCTCCTACATAGATCCTGAGTACCAAAGGACAGGGCAAATATCTCCCAAATCTGATGTTTATGCTTTTGGAATGGTGATCCTACAGTTGTTAACTGCAAAACCAGCAAGAGCACTAGCGCATTTAGTAGAAACAGCAATTGAAAAGGGAAATTTAGCAGAAATGTTGGATCCTACAGCAGGGAATTGGCCATTTCAGGAGACTTTGGACTTAACTCAATTAGGCGTAAGCTGCGCAGAACTTCGGCGTAGAGACAGGCCTGATTTGAAAGACCATGTACTTCCCATACTGGAGAGATTAAAAGAAGTCGCTGATAGGGCTCAGCATTCTGCCACAGTTCTTACTGTTAAATCTAGACCCCCTAATCACTTTATCTGTCCAATACTTCAGGATGTGATGGAGAATCCTTGTGTTGCTGCTGATGGTTATACTTATGATTACAAGGCAATTGTAACATGGCTGCAAACCCATGAGAAATCACCAATGACAAATATGCCATTACCTCATAAGAATCTGATTCCAAATTATACGCTTCTGTCTGCTATTATGGAGTGGAAATCCAGACAAAACTGA 2367 0.4119 MMDSVRGKGDELKKSPSLHSTSSAVAVAIKGNKKSKHMVQWALDTFVPEGRIVFKLIHVHSEAAFKKETEWKTSVMLLPYKKMCEQRKVHVDIVVIQSDDVETAIADEVAKSSITNLVIGASSHAIFTSKLKGLSAKISSCTPRFCTVYAVSKGKLFSSRPSDMEIHESLIDDSSETSCSTNSSLNSASTSQIDYGSVRSYTPINSSSLAAQRYQALSAINQTRQSTKAGLIENNHSRSHSLDLGIEQTAIYSSTRNSDIDYALTRVSSCKSNLSDGESWNYYQNPTMDVSPATVSPDKQESFNLELEKLRIELKHAQGMHMVAQRQNIDASQMLNNLSKKRMEESVKLKEIIAKEGMAKKLVMKEREKCEAAEREAAYLKRSSEEEAFERKEAEMKAVEAAERNEKLEDALNGSMLQYKKFTWDEIVSATSSFSEELRIGKGACGTVYRCDLYHTPVAVKILCSTEDHIIKQLQQELEILSRVRHPNLLLLLGACSDHGCLVYEYMENGSLEDTLLQNKSNISIPWFKRYQIAWEVASVLAFLHSSKPRPIIHRDLKPANILLDGNLVSKVGDIGLSTLLHSDTLSTMFKDTEPVGTLSYIDPEYQRTGQISPKSDVYAFGMVILQLLTAKPARALAHLVETAIEKGNLAEMLDPTAGNWPFQETLDLTQLGVSCAELRRRDRPDLKDHVLPILERLKEVADRAQHSATVLTVKSRPPNHFICPILQDVMENPCVAADGYTYDYKAIVTWLQTHEKSPMTNMPLPHKNLIPNYTLLSAIMEWKSRQN 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2556 788 CDD STK_N 25 154 - -
Acco01g2556 788 SUPERFAMILY Protein kinase-like (PK-like) 416 689 IPR011009 -
Acco01g2556 788 Gene3D Transferase(Phosphotransferase) domain 1 507 716 - -
Acco01g2556 788 Pfam Protein kinase domain 436 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g2556 788 SUPERFAMILY RING/U-box 716 786 - -
Acco01g2556 788 Pfam U-box domain 719 786 IPR003613 GO:0004842|GO:0016567
Acco01g2556 788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 717 788 IPR013083 -
Acco01g2556 788 Coils Coil 307 327 - -
Acco01g2556 788 SMART serkin_6 434 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g2556 788 Gene3D HUPs 21 152 IPR014729 -
Acco01g2556 788 Gene3D Phosphorylase Kinase; domain 1 418 506 - -
Acco01g2556 788 ProSiteProfiles U-box domain profile. 717 788 IPR003613 GO:0004842|GO:0016567
Acco01g2556 788 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 25 131 - -
Acco01g2556 788 Coils Coil 363 411 - -
Acco01g2556 788 PANTHER OS02G0152300 PROTEIN 25 782 - -
Acco01g2556 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672|GO:0006468
Acco01g2556 788 CDD RING-Ubox_WDSUB1-like 719 773 - -
Acco01g2556 788 ProSiteProfiles Protein kinase domain profile. 434 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco01g2556 788 SMART Ubox_2 721 783 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2556 Acco-ChrAcco01 42613390 42619401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2556 22 785 U-box Gene Family AT4G25160 46.476 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Acco01g2556 Pkinase 9.8e-39 CL0016