Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2548 ATGAAATTAAGACATTCATCAGAGATATTTGCAGAAGAGGAGGAAGATGGAGAGAGAGAATTTGGTGGAAGAGGAAAATACGTAAAGAAAGGACCATGGAGTGCTGAAGAAGATGAGATCCTCATGAAACATGTCAAGAAAAACGGTCCAAGGGATTGGAGCTCCATTCGATCCAAAGGTCTGCTTCCACGGACCGGAAAATCTTGCCGGCTGCGATGGGTTAACAAGCTTAGACCCAACTTAAAGACAGGGTGCAAGTTTTCAGCAGAGGAAGAAAGAGTGGTGATAGAATTGCAGGCAGAGTTTGGGAACAAGTGGGCGAAAATAGCGACATACTTGGAAGGAAGAACAGATAACGATGTGAAGAATTTCTGGAGCAGTAGGAGAAAGAGGTTGGAGAGAATGTTGCAGAAACCATCTCCACCACCATCATCAAAGCCAAACAATAAGAACAAAGCAACATCTCAAATTCCTCATCAGCCACCACAAGTAGTTGAACAGGTTCCTGCTTCAAATCAAGTGGAGCAAAACCCATCAGGCAATAACAAGTGTCATCCTTTGGTTGAAGTGAAAGCAGAGGAGGCCACTCCACTTGACATGGTTCCATCTTCATTTGAGTCTTGTTTATCAGACTACACTTTTTCTCAAGTGCTTCTTCCTGATGTGTCCCACCACCAAGTGGACTATGGCGGTCTCTTGCCGCCGCCGATGTGCCATGGCCTGCTTGATCCGGAGCCTTTCGATGATGCCACCTTTCATGACTTGTTTGAGCCGCACAAGAAGCCGGGAGGAATCTTTCAGACTTCATCAATTCCAAAAAATGCCTTCTTTGAGGACTTCCCAAGTGATATATTTGACTATTTTGAAGACCTTCCTAACTCATTAGACAAATGA 894 0.4452 MKLRHSSEIFAEEEEDGEREFGGRGKYVKKGPWSAEEDEILMKHVKKNGPRDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFSAEEERVVIELQAEFGNKWAKIATYLEGRTDNDVKNFWSSRRKRLERMLQKPSPPPSSKPNNKNKATSQIPHQPPQVVEQVPASNQVEQNPSGNNKCHPLVEVKAEEATPLDMVPSSFESCLSDYTFSQVLLPDVSHHQVDYGGLLPPPMCHGLLDPEPFDDATFHDLFEPHKKPGGIFQTSSIPKNAFFEDFPSDIFDYFEDLPNSLDK 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2548 297 Pfam Myb-like DNA-binding domain 33 83 - -
Acco01g2548 297 Gene3D - 85 159 - -
Acco01g2548 297 ProSiteProfiles Myb-like domain profile. 86 129 IPR001005 -
Acco01g2548 297 CDD SANT 32 77 IPR001005 -
Acco01g2548 297 PANTHER TRANSCRIPTION FACTOR DUO1 24 188 - -
Acco01g2548 297 Gene3D - 24 83 - -
Acco01g2548 297 Pfam Myb-like DNA-binding domain 86 126 IPR001005 -
Acco01g2548 297 FunFam MYB transcription factor 30 82 - -
Acco01g2548 297 MobiDBLite consensus disorder prediction 133 159 - -
Acco01g2548 297 SMART sant 83 131 IPR001005 -
Acco01g2548 297 SMART sant 29 79 IPR001005 -
Acco01g2548 297 SUPERFAMILY Homeodomain-like 28 125 IPR009057 -
Acco01g2548 297 FunFam Transcription factor GAMYB 85 157 - -
Acco01g2548 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 133 IPR017930 -
Acco01g2548 297 CDD SANT 86 125 IPR001005 -
Acco01g2548 297 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Acco01g2548 297 MobiDBLite consensus disorder prediction 1 23 - -
Acco01g2548 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 81 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2548 Acco-ChrAcco01 42549202 42550661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2548 19 293 MYB Transcription Factor Family AT3G60460 42.208 1.06e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco01g2548 Myb_DNA-bind_6 6e-12 CL0123