Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2534 ATGTCTTCCAGGTTTATAGCAATTGCGGCTGTTATTACAGCTTTAAGCTTTGTGGGTGTACAATTTTGCTCGGAGTTGTCGTTCAGTCAACTGAAATCAGAGGGAATAATTGGCAAGAATTTAATTCACTTGGATAAGGAGAACGCCGATCATGTCATTGAGTTGTTTTTGGGGTCGTCCACCACTATATGGTTACTCGCAAGTTTTGTGATCAATGCATTTATCCTTCTCAATCTTTGTCTCAAGACTATATTTTTCTCTGAGTTGTATCCTGCTGAAGTTCGCAAGCTGGTTGAGTGTCTCATTAATTATGTCATCTACAAGGGGGCATTTCTACCAATGATTGTGCCTCCAACAACATATCAGGCAGGTCTATGGTCTAGTTGGATGATAGTGCTATGCTCTTTAAAGATGTTTCAAACTTTGGCCAAAGATCGTTTAGAGCGATTGAATGCATCTCCATCTGCCAAACCCTGGACTTATGGTCGTGCATATTCAGCATTATTGTTGGTTTTCTTGGTTGATTTATTTTGGATAAGGCTATGTCTGATTATATATAAAACACACCCGTCCTCTATGCTTCTGTTGCTGTTCTATGAGCCACTCAGTGTCGCTTGTGAGACCCTGCAGGCTATTTTGGTACATGGGTTTCAATTGCTTGATATATGGCTCCATCATTCAGCATGCAATAACTCTGATAGTGGAAGATCAAAACTGTTTGACACATTTGCAGCAGGATCATTAATGGAATGGAAGTGGAGTCTTATTCGGAATATGGGATTTTTACTTGACATAGCAACTTCTTTTACAGCTCTTGGCCATTACTTGCATGTTTGGTGGCTTCATGGCATAGCTTTCCATGTTGTAGATGCTGTGCTATTTCTAAACATACGAACACTGCTGAGTGCTCTTGTAAATCGCGTAAGAGCCTATATAAGGTTAAGGGCGGCTTTAGGTGCACTACATGCAGCTCTTCCTGACGCAACTACTGAGGAGCTACTATCATATGATGATGAATGCGCTATTTGTAGGGAGCCCATGGCCAAGGCCAAAAAGTTAAAATGCAAACACCTTTTCCATCTTGCATGTTTGAGATCTTGGTTAGATCAAGGATTGACAGATATGTATACCTGTCCGACATGTCGGAAGCCTCTCTTTGTTGCCCGGCCTCAAAATGAAGCAAGCTTCAATATGCGGGAAACATCAAGTGAAGAGCCACGTACACAACAAATAGGTTCAGGGCTTGATCAGCCAAACACTGGCAGACATACCATGGCTGCTGGATTATTTCCCAACCAGACACCAAATATGGAAGGCATTTCTTGGAGGGGTGCAGCAGGACTGGACTCACCTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGGGGCTGGTCCATCTACTGCAATCAGATCCGTTGGATTAGGAAGGGTTCAAATGATGATGAGACATCTTGCATCTGTTGGAGAAAATGCTCAGAATGCCCTTGAAGATACTGCCTGGAGCCTTTGGCCCATCAATACTTCTCAGGCTTCCGCAAGTGGCTTACGGATTCCTCCTCCTCATGGGAGGATCCCGGGAGGCTCTGATAATCTACATATGAGGAGTGCCCCACGTTTTGCAAATGATAATCTGGCAAATATACTGGCCATGGCTGAGACCGTTCGGGAGGTTCTACCTCATATACCAGATGACATAATTTTCCAGGACTTGCAGCGGACAAATTCTGTGTCAGTTACAGTGAATAATCTTCTCCAAATGTGA 1764 0.4325 MSSRFIAIAAVITALSFVGVQFCSELSFSQLKSEGIIGKNLIHLDKENADHVIELFLGSSTTIWLLASFVINAFILLNLCLKTIFFSELYPAEVRKLVECLINYVIYKGAFLPMIVPPTTYQAGLWSSWMIVLCSLKMFQTLAKDRLERLNASPSAKPWTYGRAYSALLLVFLVDLFWIRLCLIIYKTHPSSMLLLLFYEPLSVACETLQAILVHGFQLLDIWLHHSACNNSDSGRSKLFDTFAAGSLMEWKWSLIRNMGFLLDIATSFTALGHYLHVWWLHGIAFHVVDAVLFLNIRTLLSALVNRVRAYIRLRAALGALHAALPDATTEELLSYDDECAICREPMAKAKKLKCKHLFHLACLRSWLDQGLTDMYTCPTCRKPLFVARPQNEASFNMRETSSEEPRTQQIGSGLDQPNTGRHTMAAGLFPNQTPNMEGISWRGAAGLDSPWLHSWPNQGVDGAGPSTAIRSVGLGRVQMMMRHLASVGENAQNALEDTAWSLWPINTSQASASGLRIPPPHGRIPGGSDNLHMRSAPRFANDNLANILAMAETVREVLPHIPDDIIFQDLQRTNSVSVTVNNLLQM 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2534 587 CDD CUE_RIN3_plant 548 585 IPR035667 -
Acco01g2534 587 Gene3D - 546 586 - -
Acco01g2534 587 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 48 587 - -
Acco01g2534 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 392 IPR013083 -
Acco01g2534 587 SUPERFAMILY RING/U-box 326 389 - -
Acco01g2534 587 ProSiteProfiles CUE domain profile. 547 587 IPR003892 GO:0043130
Acco01g2534 587 Pfam Ring finger domain 338 382 IPR001841 -
Acco01g2534 587 SMART FANCL_C_2 336 390 - -
Acco01g2534 587 FunFam E3 ubiquitin protein ligase RIN2 313 392 - -
Acco01g2534 587 CDD RING-H2_AMFR 338 385 - -
Acco01g2534 587 MobiDBLite consensus disorder prediction 396 419 - -
Acco01g2534 587 Pfam CUE domain 551 587 IPR003892 GO:0043130
Acco01g2534 587 FunFam E3 ubiquitin protein ligase RIN2 546 586 - -
Acco01g2534 587 ProSiteProfiles Zinc finger RING-type profile. 340 382 IPR001841 -
Acco01g2534 587 SMART ring_2 340 381 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2534 Acco-ChrAcco01 42370198 42378192 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2534 62 395 C3H Transcription Factor Family AT3G16090 28.022 7.72e-28 115