Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2523 ATGTCATTAAGAATTAATGGTGTTCACGATAATGAAGAACAAGAAAGGAGATGGGAAAATCTGCCTCGAGAATTGCTTTGGGACATAATAAAGAGAGTGGAAGAGACTGAGACATGTTGGCCTTCACGTGCTATTCTGTATTGTGCTTCAGTTTGCAAGTCATGGAGAACAATCACAAAGGAGATTGTTAAGAGTCCTGAGCTATCTGGACGACTCAGTTTTCCCATCTCATTGAAGCAACCAGGGCCTATAGATTTTCCAATCCAGTGCTATATCAAAAGGAACAGAGAAACCTCCACTTATTTGTTGTACTTGGGTCCTGAGCCATCAGAGAATAAGAATGATAAGTTGTTGCTGGCTGCCAAAAGAAAACAAAGGATAAGAAATATAAAATATGTTATATCTTTAGTTGCTGATGACTTTTGTCCGACCAGCAAGACATATATTGGCAAACTCAGGTCCAATTTCTTCGATAACAAGTTCAGTATATATGATAGACAATATCCATCACAAGATGAAGCTGCAGCTGCAGGAGGAAAAAAGGTGTCGTCTCTACGAAAGTACAAAGTTGGTACCATAAAATACAAGAACAACACGATTCACAAATACAGATTTCACAGTATCAAAGGTCCAAGAAAAATGAAGTGTCTAATGATGAACTACTCTACTACTAATAATAATAAGGTGGATTATCATCAGCATCCTCTGAAACTTAAAAGCAAGGATCCCATATGGGATGAAGAATGCCAACACTGGCACCTCAACTTCAGGCATCACGATACTTTGGCTTTTGATAATTTCCAGCTTGTTTCTGCTGCTGACGACGAGGATGATGACGAAGATGATGAAGAAGAAGAAAAGGTAATTTTGGAATTTGCTAAGATAGAAGAAGACGTGTTTATTATGGATTACTGTTATCCACTCTCAGCATTTCAAGCCTTTGCTCTCTGTCTCAGCAACTTCGATGCCAAACCAATCGGTGATTGA 987 0.387 MSLRINGVHDNEEQERRWENLPRELLWDIIKRVEETETCWPSRAILYCASVCKSWRTITKEIVKSPELSGRLSFPISLKQPGPIDFPIQCYIKRNRETSTYLLYLGPEPSENKNDKLLLAAKRKQRIRNIKYVISLVADDFCPTSKTYIGKLRSNFFDNKFSIYDRQYPSQDEAAAAGGKKVSSLRKYKVGTIKYKNNTIHKYRFHSIKGPRKMKCLMMNYSTTNNNKVDYHQHPLKLKSKDPIWDEECQHWHLNFRHHDTLAFDNFQLVSAADDEDDDEDDEEEEKVILEFAKIEEDVFIMDYCYPLSAFQAFALCLSNFDAKPIGD 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2523 328 Gene3D - 10 68 - -
Acco01g2523 328 PANTHER TUBBY-RELATED 12 324 - -
Acco01g2523 328 Pfam Tub family 78 322 IPR000007 -
Acco01g2523 328 SUPERFAMILY Tubby C-terminal domain-like 66 324 IPR025659 -
Acco01g2523 328 Gene3D Tubby Protein; Chain A 75 328 IPR025659 -
Acco01g2523 328 Pfam F-box domain 18 63 IPR001810 GO:0005515
Acco01g2523 328 PRINTS Tubby superfamily signature 148 172 IPR000007 -
Acco01g2523 328 PRINTS Tubby superfamily signature 306 328 IPR000007 -
Acco01g2523 328 PRINTS Tubby superfamily signature 238 255 IPR000007 -
Acco01g2523 328 PRINTS Tubby superfamily signature 132 148 IPR000007 -
Acco01g2523 328 PRINTS Tubby superfamily signature 285 304 IPR000007 -
Acco01g2523 328 SUPERFAMILY F-box domain 15 61 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2523 Acco-ChrAcco01 42290804 42297795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2523 18 325 TUB Transcription Factor Family AT2G18280 46.724 3.21e-97 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Acco01g2523 Tub 6e-63 CL0395