Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2492 ATGGAGAAGAAAAAGAAGATTAACAACAATGGTGGCAAGATGTGCATGATCTGCAAAAGGTGGTTCGCTAGCGGAAAAGCTATGGGAGGGCATTTGAAGTCTCACTTTGTCAAACATCCTATCCCTCCCAAGCCTGCTCCAATATCTCCAATTGTAGATCAAGTTCCTTCAGAAGTATACAAAGTCGATGTTAATAGTGGTTCGTCCTCAACCCATCAGCGTCCCGAACAAAAATTTCACCCCATGAATCATCATGATTTTGCAGAAAGAGTTTTGAAACCCGTCCATGACAGCCAAGGAAGCGAAGAATCAAATCAATCTTACATGACTGGAAAGAGATTTAAACGTAGTTTCCGTAAGATTGATGATCCAACAACAAGAGCATCAATGATGTGGCTGTCGTCTAAGACAAAAGTTGATGAAGACAATAACCCAAAACAAACAGGTTTGATCTTTGATTCTTGCTTTCCAGTTATAAATGCTGCTTTGACTCTCATGTTGCTTTCCAAGGAGAAATGGCCCCAAGGCAGAGAATTGATGAGCATCAAGAAGAAACAAAAAGTGAAGGATAATGAGAATGAACAGGAAGACTCATTTGTGGAGGACCATTCTCATGGCGGCAGAAGGTCACTCGAGTGCAAGATGGGCACGAAAGTTTTCGGATCTTACCAGGCACTTGGTGGGCGCAACACAAGCCACAAAAAGTTTATCAAGAATGATGAATTGGAGGTAGATGGAGAATTTGATGAAGAAAATAGGGATGATGTTCTTGAAGATCCAAAAGTGTTCAAGTGCCCCCACTGCTCTAAAGTGCTTGGATCTAGCCAAGGACTTGGAAGACACAAGAAGATTCACGTTCCCAATGCTATGAAATTTGGGGCCAATGACATAGATCTCAACTCACCTGCTCCAGTGGAAGATATAGAAGAGAATAGCCAAGATTATGATTGA 951 0.4175 MEKKKKINNNGGKMCMICKRWFASGKAMGGHLKSHFVKHPIPPKPAPISPIVDQVPSEVYKVDVNSGSSSTHQRPEQKFHPMNHHDFAERVLKPVHDSQGSEESNQSYMTGKRFKRSFRKIDDPTTRASMMWLSSKTKVDEDNNPKQTGLIFDSCFPVINAALTLMLLSKEKWPQGRELMSIKKKQKVKDNENEQEDSFVEDHSHGGRRSLECKMGTKVFGSYQALGGRNTSHKKFIKNDELEVDGEFDEENRDDVLEDPKVFKCPHCSKVLGSSQGLGRHKKIHVPNAMKFGANDIDLNSPAPVEDIEENSQDYD 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2492 316 Pfam C2H2-type zinc finger 15 35 - -
Acco01g2492 316 Pfam C2H2-type zinc finger 218 235 - -
Acco01g2492 316 Pfam C2H2-type zinc finger 262 285 - -
Acco01g2492 316 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Acco01g2492 316 Gene3D Classic Zinc Finger 181 288 - -
Acco01g2492 316 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 13 311 IPR044303 GO:0006355
Acco01g2492 316 SMART c2h2final6 263 285 IPR013087 -
Acco01g2492 316 SMART c2h2final6 13 35 IPR013087 -
Acco01g2492 316 MobiDBLite consensus disorder prediction 293 316 - -
Acco01g2492 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 290 IPR013087 -
Acco01g2492 316 SUPERFAMILY beta-beta-alpha zinc fingers 14 285 IPR036236 -
Acco01g2492 316 ProSitePatterns Zinc finger C2H2 type domain signature. 265 285 IPR013087 -
Acco01g2492 316 MobiDBLite consensus disorder prediction 184 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2492 Acco-ChrAcco01 41987834 41988784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2492 15 315 C2H2 Transcription Factor Family AT1G02030 28.571 5.31e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco01g2492 zf-C2H2_6 0.00018 CL0361